PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17686A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 516aa    MW: 55578.2 Da    PI: 7.3612
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17686AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.91.7e-31118171255
                    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  Oropetium_20150105_17686A 118 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 171
                                8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-29114172IPR009057Homeodomain-like
PROSITE profilePS5129412.601114174IPR017930Myb domain
SuperFamilySSF466895.02E-14117172IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-22118173IPR006447Myb domain, plants
PfamPF002498.9E-9119170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MGDDVKEKVL VVEILEDGEK RSSRNSLPHI ALDLNEDFAE ASEDGDENEE EEVDDDDGGG  60
STSEDVAGAG RSSSNNSSTN HNSGSNKDQD INSSSSKAEG SGGERAPTVR QYNRSKLPRL  120
RWTPDLHMAF VHAVERLGGQ ERATPKLVLQ MMNVRGLSIA HVKSHLQMYR SKKLDHESGH  180
DRAGISSVFS PMAEFHMRRG DPRFHDMFFQ RTAGSALSSR LLDSRGIFGS SRNGVSMDAS  240
RIYGLLQRRQ PTMQTFDFKN YSSLRNQELV FNQHAATART AAIFRKDDGK PASHLFDVRH  300
AIASNRASAA DTDAADTRGT AIGGSSSRPL SRTMSATALS TGFALGNHHF LPRWRGAGSS  360
NGYDLNGGAN TTSSDPVVKS ASLGARLEKH HEPKASNKVI DEIRTATGGT KRTTNKSTAE  420
ENGCTPHLQL SLRPNEGEEA EKATKKRKCI GIRSSNEQEV DSDKTPPLSL SLSLRGGEGS  480
GGDAGRLETE IGSSSKKAAL GLSTLDLTMS IKALE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17686A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812252.10.0uncharacterized protein LOC112889712
TrEMBLA0A2T7DXS00.0A0A2T7DXS0_9POAL; Uncharacterized protein
STRINGPavir.Db01175.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-34G2-like family protein