PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17330A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 808aa    MW: 86964.9 Da    PI: 7.2137
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17330AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41.1e-10334380447
                                S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
            Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                W   E+e l ++v+q+G+g+Wk I +  +    gRt+ ++k++w++ 
  Oropetium_20150105_17330A 334 WCVLEEETLRKGVEQYGTGNWKDILANNPdvfIGRTPVDLKDKWRNM 380
                                55669****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-13325382IPR009057Homeodomain-like
PROSITE profilePS5129414.054326385IPR017930Myb domain
SuperFamilySSF466895.54E-15328383IPR009057Homeodomain-like
SMARTSM007178.0E-7330383IPR001005SANT/Myb domain
CDDcd116602.95E-19332382No hitNo description
PfamPF002496.7E-9333380IPR001005SANT/Myb domain
Gene3DG3DSA:3.40.50.7202.4E-14430637IPR016040NAD(P)-binding domain
SuperFamilySSF519711.02E-9430461No hitNo description
SuperFamilySSF519711.02E-9499657No hitNo description
PfamPF012666.2E-9608786IPR006076FAD dependent oxidoreductase
Gene3DG3DSA:3.40.50.7202.4E-14724788IPR016040NAD(P)-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MPRLTPADAT LILDHVLGDP SDPVSADALD SIHLLASLPS PSPALAPAHL AVAAFLAGSA  60
PDFDAAAGAL FGRPDGRARR AVGEGGSPTL ASKEAVAVAD QFHAAVGNSF AQTVLKGLFG  120
DRSAAEERVR ELLTAEWAAI GPSRLEEAAE RLVGIKAIEA WRAADEAARA KYRMLVGQES  180
SREILSKLKE ASSHVNPIST PEIRKVVDAL QTSCADLHRS MEDPLPAAKA AADEVLAARM  240
DKAVNLNAAS VNSRQANCGT AGPSSLNDKD KDPNKRTCSL MDRNPTAQTY QWEDSPDTEG  300
PQFGRPHLPS PRRIPVSPLQ PLENKNKRRR ARKWCVLEEE TLRKGVEQYG TGNWKDILAN  360
NPDVFIGRTP VDLKDKWRNM TKYSPDVNVM PPSASPPSRP LPNLSLCSRR TVSAAASSSL  420
AGGHGRRPLR YAVLGAGFAG LSVAWHLLKV PSPLLFARPQ VTLKHPLKAE PTLVLDYSFQ  480
HSPSDSRVSV DIYDENGVGG GASGVSGGLL HPYSPKVKLL WKGAEFWKEC MDLLRSAEQA  540
NGAAGSDRTV YMPMALNINP KKYLQVLHAF MLCSPALFLA CQNLSDDVSV LPSEQKEFKL  600
YNQHIDNLQQ LTGDYDSVII CLGAKASSLP GLTNKLPLRA CRGVITQFQL PSDTGEEYDN  660
RSPSILSDAW LAFQSSCSVS VGSTWQWNSE NYASLVSDEE AHTAMEELLP KASGVYPGIT  720
KWDFVHARAG IRAMPPLTAN GSLPLLGCLN DLLGEMGKSN CKFWLVGGLG ARGLLYHGLV  780
GKLTAQAAIS CDESLIPSEF TCWKVIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17330A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964675.11e-177uncharacterized protein LOC101753656
TrEMBLJ3MBT70.0J3MBT7_ORYBR; Uncharacterized protein
STRINGOB06G14810.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.14e-15TRF-like 5