PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17309A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 376aa    MW: 37715.2 Da    PI: 6.1631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17309AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.5e-12154199555
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Oropetium_20150105_17309A 154 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 199
                                99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.46E-13147203No hitNo description
SuperFamilySSF474596.67E-17147209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.282149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-16151208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9154199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MASGDGGGGP QADDFFDQML STLPSAWADL GAGSKSPWEL SAGAAAEDQG PFGDESALLT  60
SRLEQHQIGG DKSSPGGGDH AVFNGFEMHS ATAVQQPFGQ QGGSVSPQSL GGPAASSGGT  120
PGGGTTSSAG GGGGAAPPRQ QRVRARRGQA TDPHSIAERL RRERIAERMK SLQELVPNAN  180
KTDKASMLDE IIDYVKFLQL QVKVLSMSRL GGAAGMAPLV ASMSSEGNNN SNGSSSNGGG  240
GAKGSSAPAX XXXXXXXXXX XNNGGGLRVT EHQVAKMMEE DMGTAMQYLQ GKGLCLMPIS  300
LASXXXXXXX XXXLLSRPPP PVARHAAASA QQLHDGNGAA AATAATSSPA AANGGGAGGG  360
DDARPGVSDG GGKLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17309A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126141e-52CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560994.11e-120transcription factor bHLH82
SwissprotQ9ZUG96e-69BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A287VWG41e-121A0A287VWG4_HORVV; Uncharacterized protein
TrEMBLA0A3B6REI01e-120A0A3B6REI0_WHEAT; Uncharacterized protein
TrEMBLA0A446X4U61e-120A0A446X4U6_TRITD; Uncharacterized protein
STRINGBRADI1G47350.11e-120(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.15e-43LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]