PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_16988A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 360aa MW: 39792.1 Da PI: 9.6633 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 397.2 | 2.3e-121 | 33 | 359 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernka 73 md+ g+re r+++ +y+ p+++lk++ +++++++++e+d++irer++al+ekkaa+aerdmaf+qrd+a+aern+a Oropetium_20150105_16988A 33 MDNLGHREngRQRPdQYKaihtqwmmPQRQLKDHHSMNVLALMNEKDSAIRERDHALAEKKAAIAERDMAFAQRDAAMAERNAA 116 9999*99999****99*9*****999889******************************************************* PP GAGA_bind 74 lverdnkllalllvensla...salpvgvqvlsgtksidslqqlse.....pqledsave.lreeeklealpieeaaeeakekk 148 +verdn+l+al+l++++ s +++ ++ l+gtk+i+++++ls+ ql+ds+++ +re++++ea+pi++a+ ++ + k Oropetium_20150105_16988A 117 IVERDNALAALELARTNGFnmnSGNGFHQGPLNGTKNIHHHDELSHvqsspLQLADSPYDhVREMHISEAYPISTAPGSVGKGK 200 ***********999887555558899999**************999899999********9*********************** PP GAGA_bind 149 kkkkrqrakkpkekkakkkkkksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWG 226 k++k++++++p+++ + +k++++++k+ ++ e+ sk+e+k++dl+ln+vs+Dest+P+P+CsCtG lrqCYkWG Oropetium_20150105_16988A 201 KPRKNNSQASPLKRPSGVLRKTKKTNWKNGMVPGLGEDparasaSKNEWKDQDLGLNQVSYDESTMPAPACSCTGELRQCYKWG 284 *****************888888888888888776544567888**************************************** PP GAGA_bind 227 nGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 nGGWqS+CCt++iS+yPLPv+++rr+aR++grKmS+gaf+klL++LaaeG+dls+pvDLkdhWAkHGtn+++tir Oropetium_20150105_16988A 285 NGGWQSSCCTMSISMYPLPVMPNRRHARMGGRKMSGGAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 359 **************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 5.4E-97 | 33 | 359 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 8.2E-162 | 33 | 359 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MAVELGCLQP VVASVLDKIL LPPGERQNAD VIMDNLGHRE NGRQRPDQYK AIHTQWMMPQ 60 RQLKDHHSMN VLALMNEKDS AIRERDHALA EKKAAIAERD MAFAQRDAAM AERNAAIVER 120 DNALAALELA RTNGFNMNSG NGFHQGPLNG TKNIHHHDEL SHVQSSPLQL ADSPYDHVRE 180 MHISEAYPIS TAPGSVGKGK KPRKNNSQAS PLKRPSGVLR KTKKTNWKNG MVPGLGEDPA 240 RASASKNEWK DQDLGLNQVS YDESTMPAPA CSCTGELRQC YKWGNGGWQS SCCTMSISMY 300 PLPVMPNRRH ARMGGRKMSG GAFTKLLSRL AAEGHDLSTP VDLKDHWAKH GTNRYITIR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00540 | DAP | Transfer from AT5G42520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_16988A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141822.1 | 0.0 | BBR/BPC transcription factor | ||||
Refseq | XP_008658294.1 | 0.0 | BBR/BPC transcription factor isoform X1 | ||||
Swissprot | Q5VSA8 | 0.0 | BBRD_ORYSJ; Barley B recombinant-like protein D | ||||
TrEMBL | A0A1D6NW48 | 0.0 | A0A1D6NW48_MAIZE; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A3L6DC17 | 0.0 | A0A3L6DC17_MAIZE; Barley B recombinant-like protein D | ||||
STRING | GRMZM2G118690_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6226 | 37 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-100 | basic pentacysteine 6 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_16988A |
Publications ? help Back to Top | |||
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