PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_14854A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

FAR1

Protein Properties

Length: 270aa MW: 30437.8 Da PI: 7.9345

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_14854A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.9	3.1e-08	170	200	60	90
FAR1 60 tgCkaklkvkkekdgkwevtkleleHnHela 90 +gCk ++++++++d+ w++ +++ +HnHe++ Oropetium_20150105_14854A 170 CGCKSRMVLRRTDDHGWYIRHFVDDHNHEMS 200 8****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-5	170	200	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MASVIPWPTC APAAAVVPAA TVLASFSPAA ATVHEIGVEV AAEDSAVCFG GLTLAATGMR 60 YRPEVVGESE THPGYVRRRR SVSGTSERKP VIGRVAPLEE ALRNFQSRGN RYIICPKEGM 120 VFDSYDEAYE FYNLHSWEKG FGIRCNSSEK NNAQYEFMKE IVCMCQGRMC GCKSRMVLRR 180 TDDHGWYIRH FVDDHNHEMS ETCGEKQHWP SHKHLDIYTR DIIKHLRKNN ISLGKYYVET 240 GMVLYVINHV EGIGFKYYLL VVMLCPKSS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_14854A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	6e-10	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_14854A