PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14598A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 794aa    MW: 84203.4 Da    PI: 6.3683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14598AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.000121251581654
                                HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                +N +f  Lr  +P+       +++Ka+ L  A  YI +L
  Oropetium_20150105_14598A 125 LNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 158
                                8*************6.....49**************998 PP
2HLH37.93.2e-12364409454
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                +h e+Er+RRd++N +f  Lr  +P+       +++Ka+ L  A+ YI +L
  Oropetium_20150105_14598A 364 SHVEAERQRRDKLNRRFCDLRAAVPTV-----SRMDKASLLADATSYIAEL 409
                                799***********************6.....4***************998 PP
3HLH28.23.4e-09613658454
                                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                +h e+Er RRdr+  +f  Lr  +P+ +       ++Ka+ L  A+ YI +L
  Oropetium_20150105_14598A 613 SHVEAERLRRDRLHRRFCDLRAAVPTvS------GMDKASLLSDAISYIIEL 658
                                799***********************55......69*************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.978109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6119164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-7124170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-6125167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.45E-4125163No hitNo description
PROSITE profilePS5088815.205360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-11363414No hitNo description
Gene3DG3DSA:4.10.280.101.9E-15364421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-15364423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9364409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.7609658IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-14612675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12613672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6613658IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-9615664IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MQHSHGVMDE LGSHASFCSP ASPPSFFFAA EGHQQVLEFM SCGVPEQWLI GDEDTLDKPP  60
LHDGGAEWAV GVPHSAGSDL SPMPASLQSS VRSVMKKRRG RKPGPRSDGP TMSHVXXXXX  120
XXXXLNRRFC DLRAAVPTVS RMDKASLLAD AAAYIAELRG RVEQLEXXXX XXXXXXXXKN  180
QGGASLFPVT GLEKEKLEVR MVGREQAVVR LTTAASRHEP ARLMGALRAL DLTVQHACVS  240
RVGDATVQDA VVDVPAALQD EGCLRAALLH LFCHSSSGGS PASSPAPFFF PADDDGSGPP  300
VLEFVSSEIP EQWLDDYGDG LDGGAGNGND GGGKLLPAPA AAAAAKKRGR KPGSRRTDAG  360
PVLSHVEAER QRRDKLNRRF CDLRAAVPTV SRMDKASLLA DATSYIAELR ARVEKLEADA  420
KHAPAAAGEG AAARDAAPSS FGLEEEKLEV RMVVGREAAA ALRLTSAARH APARLMEALR  480
LLDLPVQHAS VCRAAGVTVL DAVVDVHAGR PLQDAACLRA ASGGGRPSSP SASFFSSASA  540
ADNTVFEFLT SEVPEQWFLL DDDDLLLQDQ NNQLTRGYAT AAEGSYGLNG TTPPPRRRGR  600
RPFPGSSDGP VVSHVEAERL RRDRLHRRFC DLRAAVPTVS GMDKASLLSD AISYIIELRG  660
RVEQLESEAQ NQQAAHPVAA AVADAAAAGS SNSNSNSPLE GGIEEEKLEV RMLGSSSISS  720
DAAASLRFTT TAARHSPARL MAALRSLGLH VQHASVFRLG DVTVQDAVVD VPAGLRDEGS  780
LRANLLLSLQ ESG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-16363668763Transcription factor MYC2
5gnj_B1e-16363668763Transcription factor MYC2
5gnj_E1e-16363668763Transcription factor MYC2
5gnj_F1e-16363668763Transcription factor MYC2
5gnj_G1e-16363668763Transcription factor MYC2
5gnj_I1e-16363668763Transcription factor MYC2
5gnj_M1e-16363668763Transcription factor MYC2
5gnj_N1e-16363668763Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1618623RLRRDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14598A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444643.11e-103transcription factor bHLH14
TrEMBLA0A368RQ191e-104A0A368RQ19_SETIT; Uncharacterized protein
STRINGSb07g025310.11e-102(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.13e-19bHLH family protein