PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12753A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 311aa    MW: 33368.5 Da    PI: 8.4296
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12753AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.5e-061982351254
                                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Oropetium_20150105_12753A 198 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 235
                                677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-11196250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.51E-6196240No hitNo description
SMARTSM003530.0035197241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-9200243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDWTQAFLSG RSDDASFQAV VQDDMARAHP TAEEAAMNNP LIRAMNDGFL LDHQQAAPQQ  60
ALFDAASAHD ISMYGDSQPS AAGYNVAAAT QLPHQLLKPS VPASNTPMQQ YLSGSNYLPF  120
GGPLPSQLLL QALQQPKLSS RSSNAASTLM VKSNSGLAQQ EASSSPATKK SGSESSSPAP  180
AKRLRIEAPS PLPTFKVRKE KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHEQVA  240
SLSSPYLKNG IPLQQFQKKG AEDAKGNGDM KKNQDLRSRG LCLVPVANTY TVASETVPEF  300
WHPTFGGTFR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12753A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970206.11e-136transcription factor bHLH112
SwissprotQ8GXT36e-47BH123_ARATH; Transcription factor bHLH123
TrEMBLK3XIS31e-136K3XIS3_SETIT; Uncharacterized protein
STRINGSi001796m1e-137(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]