PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_10476A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bHLH | ||||||||
Protein Properties | Length: 111aa MW: 12516.4 Da PI: 10.3037 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.8 | 1.2e-05 | 37 | 73 | 1 | 41 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKa 41 +++ ++erE+r R+ N+ f+ L ++l ++ + + Ka Oropetium_20150105_10476A 37 KKVHKSEREKRKRNTQNDLFDVLGKMLEPD----RQNNGKA 73 678899*********************996....3444445 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.77E-12 | 33 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-9 | 34 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.518 | 36 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MVPRDRAHGV LAVTPAPAKE IVHGPTLSIK CEKKVPKKVH KSEREKRKRN TQNDLFDVLG 60 KMLEPDRQNN GKACMLSDTT RILKDLVSQV ESLRKENSAL KNESHYFDPQ * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_10476A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958406.1 | 5e-49 | transcription factor BHLH062 | ||||
Refseq | XP_012698879.1 | 5e-49 | transcription factor BHLH062 | ||||
Refseq | XP_012698880.1 | 5e-49 | transcription factor BHLH062 | ||||
Swissprot | Q69V10 | 5e-40 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | A0A368Q7X6 | 1e-47 | A0A368Q7X6_SETIT; Uncharacterized protein | ||||
STRING | Sb02g040140.1 | 4e-48 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 8e-15 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_10476A |
Publications ? help Back to Top | |||
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