PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_10425A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

GeBP

Protein Properties

Length: 381aa MW: 40902 Da PI: 5.1852

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_10425A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	112.3	3e-35	83	182	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfs 81 lfqrlw+eeDeiv+L+G+ +f+a +g+ +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg+ +sf+ Oropetium_20150105_10425A 83 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRDSGDAFSFR 166 79**********************99877778***********************************8999*** PP DUF573 82 kehdqkifelskkiWg 97 ++h+q ife+++ iW+ Oropetium_20150105_10425A 167 SPHEQAIFEIARNIWR 182 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.5E-31	84	181	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MPPTGDDPST AAAATGISFP DADGGGDSED GDFPDVHLLD PSEPGPPNPA TSSATVLPHA 60 VPAGGSGGGG PVNSGNGGER RPLFQRLWTE EDEIVILRGF AEFTAARGTA FASHQYDTDP 120 FYEDMRRRLQ LDFSKSQLVE KLRRLKRKYR NCVSRLRDSG DAFSFRSPHE QAIFEIARNI 180 WRPANKHGRD PSADSDDEDA VAAAAGTAVP GNTSPNGEVK SPSSGKQRRR KRGTEIATAA 240 GTAPAIMGQP PQPVQLSVSV PVKMEDSLPA LTQTPMPVTV TMDNSEPLSL PVISPQPGVM 300 DVEKNTLTPL LKEMIRAMIN VGANPFGAKL PELPLGLPME GEKWRKQRIL ELEVYLKRIE 360 LLQDQVKATL EELKSSTPGT *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MPPTGDDPST AAAATGISFP DADGGGDSED GDFPDVHLLD PSEPGPPNPA TSSATVLPHA  60
VPAGGSGGGG PVNSGNGGER RPLFQRLWTE EDEIVILRGF AEFTAARGTA FASHQYDTDP  120
FYEDMRRRLQ LDFSKSQLVE KLRRLKRKYR NCVSRLRDSG DAFSFRSPHE QAIFEIARNI  180
WRPANKHGRD PSADSDDEDA VAAAAGTAVP GNTSPNGEVK SPSSGKQRRR KRGTEIATAA  240
GTAPAIMGQP PQPVQLSVSV PVKMEDSLPA LTQTPMPVTV TMDNSEPLSL PVISPQPGVM  300
DVEKNTLTPL LKEMIRAMIN VGANPFGAKL PELPLGLPME GEKWRKQRIL ELEVYLKRIE  360
LLQDQVKATL EELKSSTPGT *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_10425A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002461092.1	0.0	probable transcription factor At3g04930
TrEMBL	A0A1E5UXC0	0.0	A0A1E5UXC0_9POAL; Uncharacterized protein
STRING	Pavir.Bb03462.1.p	0.0	(Panicum virgatum)
STRING	Sb02g040550.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	4e-42	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_10425A