PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_09059A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 489aa MW: 51425.4 Da PI: 6.5086

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_09059A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.6e-09	294	341	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq Oropetium_20150105_09059A 294 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 341 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.35E-10	288	345	No hit	No description
SuperFamily	SSF47459	1.44E-16	288	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.256	290	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	292	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	294	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-10	296	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MNCGPPDQMP PATAPSCFLN LNWDQSMAAA GTGDHLDPAL SSMVSSPAPN STAAAASDGL 60 ALHGISPQPQ YGGTPLSSPP KLNLSMMGQF HHYPPQQVAG AGTAGLPILE NLMPMGHLDQ 120 FLADPGFAER AARLSSFDGR VGAGGGGGYG GGVPGQFGLP DVGPVSALKE LELGNGRDES 180 SVSDPASASA EMALKGHSDG NARKRKASGK GKGKDGPPST SAKDLAKEES SGKRCKSTDE 240 SNGAEESLAK GKAAQSNSEN GGKKQQGKDS ASKAAEPPKD YIHVRARRGE ATDSHSLAER 300 VRREKISQRM KLLQDLVPGC NKVVGKAVML DEIINYVQSL QRQVEFLSMK LATVNPQLDF 360 NNLPNLLSKD MQQSCGPLQN SHFPLESSGA PMSYMNQPHQ GNPLGCSLTN GMDNQSSMHP 420 LDPAFCRPMS SQHPFLNGVS DSTSQVGTFW QDDLQSVVHM DMGQSQEMAT SSNSYNGSLQ 480 TVHMKMEL*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MNCGPPDQMP PATAPSCFLN LNWDQSMAAA GTGDHLDPAL SSMVSSPAPN STAAAASDGL  60
ALHGISPQPQ YGGTPLSSPP KLNLSMMGQF HHYPPQQVAG AGTAGLPILE NLMPMGHLDQ  120
FLADPGFAER AARLSSFDGR VGAGGGGGYG GGVPGQFGLP DVGPVSALKE LELGNGRDES  180
SVSDPASASA EMALKGHSDG NARKRKASGK GKGKDGPPST SAKDLAKEES SGKRCKSTDE  240
SNGAEESLAK GKAAQSNSEN GGKKQQGKDS ASKAAEPPKD YIHVRARRGE ATDSHSLAER  300
VRREKISQRM KLLQDLVPGC NKVVGKAVML DEIINYVQSL QRQVEFLSMK LATVNPQLDF  360
NNLPNLLSKD MQQSCGPLQN SHFPLESSGA PMSYMNQPHQ GNPLGCSLTN GMDNQSSMHP  420
LDPAFCRPMS SQHPFLNGVS DSTSQVGTFW QDDLQSVVHM DMGQSQEMAT SSNSYNGSLQ  480
TVHMKMEL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_09059A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971039.1	0.0	transcription factor bHLH77
TrEMBL	A0A0A9QTY7	0.0	A0A0A9QTY7_ARUDO; Uncharacterized protein
STRING	Si001242m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	7e-65	bHLH family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_09059A