PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08883A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 363aa    MW: 38084 Da    PI: 9.0273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08883AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-10221268455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h+ +Er RR++i ++++ L++l+P +    +k   Ka +L + ++Y++sLq
  Oropetium_20150105_08883A 221 SHSLAERVRREKISERMNLLQSLVPGC----NKITGKAVMLDEIINYVQSLQ 268
                                8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-16215282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.96E-11215272No hitNo description
PROSITE profilePS5088815.643217267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16217286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7221268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-11223273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MLPSSWAASA ELTTVPADSF ATAAQHFDSA LSSLVSSPSA RRASDSHDVA VLGDLIGRLG  60
SIICVNTAAS ATNSCYSTPL SSPPRGVSPA PAALAPFRQG GIGGDGWCYP PPLETGGGGR  120
LSRVASSNKT QTTPAHAGAR SAARKRKASG RGRTAAASVC NGSPKRSKLV AGDGNEDVAA  180
AAEDAGDAAE EQKKXXXXXX XXXXVKDYIH VRARRGQATD SHSLAERVRR EKISERMNLL  240
QSLVPGCNKI TGKAVMLDEI INYVQSLQRQ VEMMMLGYSG LDAAAAAFSS YGDPLFSTAM  300
TTPHATTTME SCTSTSFHPA GGFNGGWDPA PAAQDLQSVV VVHRPQDQQQ QQQQHRRHDG  360
KR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08883A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977901.28e-73transcription factor bHLH78
TrEMBLA0A0A9ELY07e-75A0A0A9ELY0_ARUDO; Uncharacterized protein
STRINGMLOC_66841.12e-61(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.16e-39bHLH family protein