PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08647A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family E2F/DP
Protein Properties Length: 476aa    MW: 52209.1 Da    PI: 9.3479
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08647AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.11.4e-23154218170
                    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                                r ++sL +lt+kf++ll+++++gi++ln++a+ L   dv  k+RR+YDi+NVLe+++l ek +kn+irwk
  Oropetium_20150105_08647A 154 RFDSSLAVLTKKFINLLKEAQDGILDLNNAAEML---DV--KKRRLYDIINVLEGIGLTEKIQKNRIRWK 218
                                6789******************************...**..9***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-24152218IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.0E-28154219IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.54E-16154217IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.7E-22156218IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440747.32E-28233334No hitNo description
PfamPF164212.1E-28234332IPR032198E2F transcription factor, CC-MB domain
CDDcd146606.75E-39234334No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MVRADARPPE AVSGGGRQAA AQKIVSLFAP LAKARPPRAG VVGDYHRFPR ASSPTAAGAA  60
VARAAGRGGF EEGIVVRRPL KRKAPYGESV AAESTECMIT TPGFDNRVGN PPGTPISRKT  120
ARTYKSKAKS SNAGPHTPLN ARSPVNPPTP GPCRFDSSLA VLTKKFINLL KEAQDGILDL  180
NNAAEMLDVK KRRLYDIINV LEGIGLTEKI QKNRIRWKVL DASETNLNNA LPVLETEFQK  240
LKLQEQGLEE HISEIREKLQ DLTEDESNQR WLYLTEDDIK GCFQDQILIA IKAPQGTSLE  300
VPEPNAKVGD NYQRRYRIII RSTRGPIDVY LVSKCEEKMD RQEAGVATPP RKTNPAKHAA  360
TDATRTRDRQ RSRTNEVLLN TLHFQETSDL SASYDFEGAM MKTNPSDIDS YADYWLLTDG  420
DIKRQAPHAH SSSNQLPWYQ HQSPLFLILP IQLATTGVSA TVGGNLIGDA ALCAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-19150218272PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682RRPLKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08647A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9635294e-43EU963529.1 Zea mays clone 263798 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319035.11e-147transcription factor E2FA isoform X2
TrEMBLA0A1Z5RCT01e-146A0A1Z5RCT0_SORBI; Uncharacterized protein
STRINGPavir.J29330.1.p1e-152(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.12e-91E2F transcription factor 3