PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08228A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 895aa    MW: 95210.7 Da    PI: 8.6605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08228AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-14172218455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A +Y+k+Lq
  Oropetium_20150105_08228A 172 DHIIAERKRREKINQRFVELSSVIPGR-----KKMDKATILSDAARYVKELQ 218
                                6999**********************9.....8******************9 PP
2HLH47.53.3e-15462508455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 h ++Er+RR++iN++f eL +++P++     kK++Ka+iL  A++Y+k+Lq
  Oropetium_20150105_08228A 462 EHIIAERKRREKINQRFVELSSVIPSL-----KKMDKATILSDATRYVKELQ 508
                                699************************.....9******************9 PP
3HLH45.51.3e-14727773455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Oropetium_20150105_08228A 727 HHIMAERKRREKINQRFIELSSVIPGL-----KKMDKATILSDATRYVKELQ 773
                                799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.516168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11172218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16172227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.97E-14173222No hitNo description
SuperFamilySSF474595.5E-16173228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-15174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.285458507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12461508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-17462517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-18462516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.27E-15463512No hitNo description
SMARTSM003538.5E-16464513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-17714780IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.463723772IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-14726777No hitNo description
PfamPF000105.2E-12727773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-17727781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-16729778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MEDSSMFMQW AMTALHHEPQ QAAAVDDDCS EATFPSLQAI REASQAAEMV QELIAEAHRT  60
NSWGSGDVDT TDGSSVVNNN LQQQTAMDHG IWPASHNSAA RLVPSRIAAG TNPPVCWNFG  120
AAAAQAGSGS VLAAETAAAT RGLPDLAYCS PPARRAGLLK GSGSVAAAYA QDHIIAERKR  180
REKINQRFVE LSSVIPGRKK MDKATILSDA ARYVKELQVK LKDLQEGGSN NGRNIETVVV  240
LKRPCLYAAT AAAASDGDSS PLSASSGSGT PAAGKELPEV EARLSDKNVM VRIHCENGKG  300
VAVKVLAEIE ELHLRVIHAN VMPFSGCTLT ITITAKARKK MVQELIAEAH AHLTNSWSSG  360
DGDTTDGSSV GNNSNSLKST VMDQDIWPAS PKSAARWVAR GISTGGPNPP RRSQPGINSL  420
VAETAGGATA QCLPGLMYCS PLARRAGLLK SSGSMAASYA QEHIIAERKR REKINQRFVE  480
LSSVIPSLKK MDKATILSDA TRYVKELQEK LKDLQSGGSN GRSVETMVVV KRPCLHAAAS  540
AAAAATPDGD CCSPLSASKQ LSDIEARFSD KSVTVRIHCD NGKAVVAKVL AEIEEIHLGI  600
VHANDSSMFM QWALSTLQHE HHASDDGPEL GYSAPSRDGW WPSQNSTVYA AAARSTGGAT  660
NQPVSWNFGS ASAWPSKESM GNSGSAAVAR DCGALPQPTA HESPLTRRTT ARSSGVSRSS  720
APPYVQHHIM AERKRREKIN QRFIELSSVI PGLKKMDKAT ILSDATRYVK ELQGKLKAHE  780
DGGCRKGRRN MDSAVLAEKK PRIVTVPDGE DGGGSPSDVA SVTTSATRRG TVPEIEVKIS  840
KGNVMVRIHC EYVRGVLVRL LAEVEELHLS IVHANAMPFP ASSVIINIMA KASI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1731736ERKRRE
2732737RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08228A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795849.11e-132transcription factor MYC2-like isoform X1
RefseqXP_025795850.11e-133transcription factor NAI1-like isoform X2
TrEMBLA0A0A9D0A71e-139A0A0A9D0A7_ARUDO; Uncharacterized protein
STRINGGRMZM2G120021_P011e-131(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-34bHLH family protein