PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_07818A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 128aa MW: 13757.6 Da PI: 6.4911 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 61.7 | 2e-19 | 19 | 75 | 1 | 57 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeereda 57 +CaaCk +rrkC++dC+lapyfp ++p+++a+v+++FGasn+ ++l+ + + +++ Oropetium_20150105_07818A 19 RCAACKNQRRKCSHDCALAPYFPVTDPQRYACVQRIFGASNIARVLQPAAAADTHQL 75 6*********************************************98877666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.886 | 18 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-18 | 19 | 76 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MSSMSATSTE AAAANPSRRC AACKNQRRKC SHDCALAPYF PVTDPQRYAC VQRIFGASNI 60 ARVLQPAAAA DTHQLLNAQV QAPPPPQQQL AGNALMMVVH EPFQELDTLL LDDVHAADNL 120 FVDDKIV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_07818A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466327.1 | 1e-29 | LOB domain-containing protein 24 | ||||
TrEMBL | C5WY44 | 2e-28 | C5WY44_SORBI; Uncharacterized protein | ||||
STRING | Sb01g005700.1 | 4e-29 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19720 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-14 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_07818A |