PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_07223A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 130aa MW: 15214.5 Da PI: 10.522 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.2e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ ++++G +W++I++ g+ R++k+c++rw +yl Oropetium_20150105_07223A 16 KGLWSPEEDERLASHIARFGVSCWSSIPELTGLQRCGKSCRLRWMNYL 63 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.4e-16 | 69 | 111 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rgr++++E++l++ ++k lG+ W+ Ia++++ gR+++++k++w+ Oropetium_20150105_07223A 69 RGRFSQQEEDLIIALHKTLGNS-WSQIAARLP-GRSDNEIKNFWN 111 89******************99.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 8 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.137 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.13E-28 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-11 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.83E-9 | 19 | 63 | No hit | No description |
PROSITE profile | PS51294 | 23.981 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-26 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.79E-9 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MERMHPCCSE EKKLRKGLWS PEEDERLASH IARFGVSCWS SIPELTGLQR CGKSCRLRWM 60 NYLRPDLKRG RFSQQEEDLI IALHKTLGNS WSQIAARLPG RSDNEIKNFW NARLRKKLRQ 120 KHFNSYVNG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-29 | 13 | 118 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 118 | RLRKKLR |
2 | 113 | 119 | LRKKLRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_07223A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817318.1 | 1e-81 | myb-related protein Hv33-like | ||||
Swissprot | Q8LPH6 | 3e-58 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A3L6SVX5 | 8e-81 | A0A3L6SVX5_PANMI; Transcription factor MYB82-like | ||||
STRING | Pavir.Eb00460.1.p | 3e-81 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14448 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-60 | myb domain protein 86 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_07223A |