PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06042A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 345aa    MW: 36084.7 Da    PI: 6.6762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06042AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.6e-14113159354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++ +++k+L
  Oropetium_20150105_06042A 113 RSHSEAERRRRQRINGHLAKLRSLLPNT-----TKTDKASLLAEVLDHVKEL 159
                                78*************************9.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.609110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.17E-12113162No hitNo description
PfamPF000102.5E-11113159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14114168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-15114176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-13116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MWDGGVDHGS QEAAHHHQLL SSWLGAVAPF AEPAAVGAFG AAANAGYACG DVFGGLGLGH  60
GGVFGFGFDA ARAAEGSGGG KAVVSGLLGS LQAELGRMTA REMMDAKALA ASRSHSEAER  120
RRRQRINGHL AKLRSLLPNT TKTDKASLLA EVLDHVKELK RQTSAMMAAA AAVTDDNEAG  180
AGPAAQLLPT EADELAVXXX XXXXXXXLVR ASLCCEDRAD LIPDMVRALA ALRMRASRAE  240
ITTLGGRVRS VLLITADDLK DDGXXXXXXX XXGDDDRRPS AVYDDERAAS HRRHECIASV  300
QEALRGVMDR RAAASSDTSS SGGGGGGGIK RQRMNYAAQE QCSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06042A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9711891e-145EU971189.1 Zea mays clone 359116 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001347905.11e-127uncharacterized protein LOC100279487
TrEMBLA0A1D6EPT71e-125A0A1D6EPT7_MAIZE; Transcription factor AIG1
TrEMBLA0A3L6G0U51e-125A0A3L6G0U5_MAIZE; Transcription factor bHLH30
STRINGGRMZM2G176141_P011e-126(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-47bHLH family protein