PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01786A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 441aa    MW: 46241.6 Da    PI: 7.1502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01786AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.00033363681754
                                HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 ++   L++l+ +      +K + a++L +++eYIk L
  Oropetium_20150105_01786A 336 GDRVTALQQLVAPF-----GKTDTASVLHETIEYIKFL 368
                                55666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.363319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-10329384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-4329372No hitNo description
Gene3DG3DSA:4.10.280.102.0E-7329377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MGDQAEMLHA APAMYNGAGG AAPHGGWWNT VVSAPTCSTA AELAGFSTWS SALAASYDMS  60
AEGAKAKSAT TASSESPGNN SSVTFQEPTG AIADVSGVGA AVQQPLVASF TDWTHLMNSG  120
GVTLHGFLQD GQHDMSSRTD QQSHINAPSL MNPSSNNLTL QGHQEHQDHG HHHQLLSNLG  180
SELLLSPTSP YGIQSSLLRS LMEPPTAAKP ALSGFQQQQY DQSYQQMVGQ APPAAARFAP  240
PLQFTNDAAF WNPSAAGFGV PAVAPSDQAS VVRAAAKQSP ARRASASLAL KTAIEGVGDS  300
SSTITKKASG QPAFKKPRLE TPSPLPTFKV RKEKLGDRVT ALQQLVAPFG KTDTASVLHE  360
TIEYIKFLHD QVGALSAPYL KQNGHQVPHL KSSSPDKSKD SHGEISLKGR GLCLVPISST  420
FAVASEVPVD FWTPFGANFR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01786A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822972.10.0transcription factor bHLH112-like
TrEMBLA0A1E5VU630.0A0A1E5VU63_9POAL; Transcription factor bHLH112
STRINGSi010139m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.31e-47bHLH family protein