PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00761A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 405aa    MW: 42983.4 Da    PI: 5.8208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00761AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13193239354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  Oropetium_20150105_00761A 193 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 239
                                79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.022190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-11193239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-15194256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-15194258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-5203242No hitNo description
PROSITE patternPS002960373384IPR018370Chaperonin Cpn60, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006457Biological Processprotein folding
GO:0005737Cellular Componentcytoplasm
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGGHGDHHHH HHHRQEVGVL VDDEDEELEQ HGRAACDGAT SGGVVEQGVG DGISGHDAAA  60
GMVFEASSSV GSVSATMAPS QILCWPPPPQ QPLHHHHHHQ APXXXXXXXX XXXXXXPPPP  120
AFFADLYARR ALQFAYDSGG GPSSSSDPLG GLGGLYLGHH HGGAGMMMPP PFGDFGRMTA  180
QEIMDAKALA ASKSHSEAER RRRERINAHL ARLRSLLPNT TKTDKASLLA EVIQHVKELK  240
RQTSEITEEA CPLPTESDEV TVDASSDEDG RLVVRASICC DDRADLLPDL IRALKALRLR  300
PLKAEITTLG GRVKNVLFVT AGDDLISGCP AGTDDGDDEQ QQEQPPPISP QQLVASIQDA  360
LRAVMERTAS SAAAAEEPGS AGGGGGLKRQ RTSSLSAILE NRSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00761A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066490.0AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984717.11e-157transcription factor bHLH30
SwissprotQ9S7Y12e-72BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1E5UY761e-166A0A1E5UY76_9POAL; Transcription factor bHLH30
STRINGSi039730m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]