PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI08G20840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 1664aa MW: 181031 Da PI: 7.5612 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00038 | 356 | 378 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F +s + Hi +H ORUFI08G20840.1 356 FECPVCNKTFEEQSRYFGHIGSH 378 89****************99777 PP | |||||||
2 | zf-C2H2 | 11 | 0.0013 | 1146 | 1168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F +s + H +H ORUFI08G20840.1 1146 FECPVCNKTFEEQSRYFGHVGSH 1168 89************999987665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50982 | 9.693 | 181 | 254 | IPR001739 | Methyl-CpG DNA binding |
SuperFamily | SSF54171 | 5.56E-6 | 185 | 236 | IPR016177 | DNA-binding domain |
Pfam | PF01429 | 2.0E-4 | 191 | 234 | IPR001739 | Methyl-CpG DNA binding |
SMART | SM00355 | 0.41 | 307 | 330 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 309 | 330 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.681 | 356 | 383 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.018 | 356 | 378 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 358 | 378 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50982 | 9.693 | 971 | 1044 | IPR001739 | Methyl-CpG DNA binding |
SuperFamily | SSF54171 | 5.56E-6 | 975 | 1026 | IPR016177 | DNA-binding domain |
Pfam | PF01429 | 2.1E-4 | 981 | 1024 | IPR001739 | Methyl-CpG DNA binding |
SMART | SM00355 | 0.41 | 1097 | 1120 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1099 | 1120 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.328 | 1146 | 1173 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.023 | 1146 | 1168 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1148 | 1168 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1664 aa Download sequence Send to blast |
METEVFPVVD LRVLTQSDLD ELAAASAHAV DPRSSCPDRA VFNESAGSRK QTFSRVRFAA 60 AAAASASAAA AAKLPRGNDK EDSFIAYHLR RLFAPDDPSL TENPSFPQTQ TLARSPSPDP 120 DQLTTNSRGV SVDLVSLSRL ADPYDAELGK RTARMTTEEE LMGFISSLAG QWVNQRMRRK 180 LVDASFFGDH LPSGWRLQLG IERKDRKAWV NCFSYVSPKG QSFATCQEVS AYLMSLLGYP 240 EFKTDNIEYG STQQHGLCAD DGVNVLGVQH QIGTSMDSQS NLPVASATFY SHSRDQDETV 300 ADDINSYECQ QCNLTFHGQS AYAHHLITFH KVSSKRRKSN KVSKFGEPVI GKDGKFECPV 360 CNKTFEEQSR YFGHIGSHAK YQGLTPEAFL QTFSGKVGNN SFAGLSSSLQ VLVGSPQLNE 420 KTTACEARSQ HHDCSTKHGG NSTRGIDLFN SNHPANFNGH NQSWCRSDEI PPTTEAQSTW 480 TYRNNEMNCA DRTVPRTVPQ PNDHEDCRVS GFAEATNFND QAGRHQGFRP FSFGTTNHCQ 540 GQIIDHAVAA SKHAEVNNSM KSRDVNLNSR LNTISFPIAT ANNETSTALN DVNRSCITGK 600 GFFLLPKIPQ TSRRTDRLDW RTPKAEGHDG IGELLNLVHT GYLSTLLFKH SHFFSHWISL 660 QDSCTLNVIQ SKQSHVAKNA QPKQRERERE KLSVRVGEIS VRGKERRWRR CSSGSAMPSS 720 SPAGGALALP LPSSVAEGAL GLGRERGGGG SSCFVRETRF VVPTAVVDEA SVEPFVCSGD 780 AHMVLPAPVV ELTKYSQPNL IMNPRSSEPE ASNKETTTIH KVCCRSPPPF ILSPTPMPLP 840 PAIPSSPSPN PTTPPPPHPP GERHGRKLPR GNDKEDSFIA YHLRRLFAPD DPSSPQTQTL 900 ALPAPPSPDP DQLTTNSKGV SVDLVSLSRL ADPYDAELGK RTAGMTTEEE LMGFISSLAG 960 QWVSQRMRRK LVDASFFGDH LPSGWRLQLG IERKDRKAWV NCFSYVSPKG QSFATCQEVS 1020 AYLMSLLGYP EFKTDNIEYG STQQHGLCAD DGVNVLGVQH QIGTGMDSQS ILPVASITFS 1080 SHSRDQDETD ADDINSYECQ QCNLTFHGQS AYAHHLITFH KMGSKRRKIN KVGKFGEPVI 1140 GKDGKFECPV CNKTFEEQSR YFGHVGSHAK YHGLTPEAFL QTLSGKVGND SFAGLSCSLQ 1200 DLVGSPQLNE KTTASEARSQ HHNCSTKHGG NSTRGIDLFN SNCPANFNGH NQTWCRPDEI 1260 PPTTDAPSTW TYRNNVTNCA DRTVPRTAPQ PNDHMDCRVS GFAEATNFND QAGRHQGFRP 1320 SSFGTTNHCQ GQIIDHAVAA SKHAEVNNSM KSRDVNLNSR LNTISFPIAT ANNETSTALN 1380 DVNRSCITGK GFSGSFSNND GAASIVLPSS GLNNKIPSSL GVADRSSIAA RSFNAGYVNE 1440 NGASEANNIG NKNNTMVYQT SLAMRPVSPC DLQLGFSGQK QQILPGYGEL RPAASGSPQL 1500 GGMAANSSIP TRPSQPQFGS MARTDALPTG PSQPGSLARP NFVPTGFSQF ASRPPTSVPP 1560 ADSSQFAGGM ARQNIPTMSE PTLVLGYTPQ MVNGPPAQLG WDLSLSRMVS EGMLPVLCIW 1620 CNSQFHHFGP IDAQQSGSFG FICPACKEKM SGNPNAPNNG PWQP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK069097 | 0.0 | AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650380.1 | 0.0 | uncharacterized protein LOC4345880 isoform X1 | ||||
TrEMBL | A0A0E0QKG9 | 0.0 | A0A0E0QKG9_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G20840.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2687 | 14 | 19 |