PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI07G19860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 457aa MW: 49096.6 Da PI: 5.5968 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 361 | 1.7e-110 | 69 | 434 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lLl+cAeav+ ++l +a+ lL ++ elasp g++ +R+aayf AL ar+++s + y+ l+ ++ + +s + a+++++ +sP++kfsh ORUFI07G19860.1 69 LSLLLRCAEAVAMDQLPEARDLLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRPLAAAQSRRISGAFQAYNALSPLVKFSH 162 689******************************************************************999********************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 +taNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasRp +p slRiTg+g+ s + le+tg+rLa+fA++lg+pfef+++ k + ORUFI07G19860.1 163 FTANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRPTKPRSLRITGLGA----SLDVLEATGRRLADFAASLGLPFEFRPIEGKIGHVA 252 ******************************************************....9**************************766655555 PP GRAS 190 eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.. 279 + +L + gEa++V++++ h l+d ++s + +++l+ksl+Pk++++veq++ h s++Fl rf+eal+yysalfd+l ++++++ ORUFI07G19860.1 253 DAAALLGPRhhGEATVVHWMH--HCLYDVTGSDAG----TVRLLKSLRPKLITIVEQDLGH-SGDFLGRFVEALHYYSALFDALGDGAGAAEee 339 66666443358*********9..888888888888....**********************.899*******************5443333323 PP GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 er+ vEr+llg ei+n+va g +r+ + + +e+W + l++aGF+pv+l + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++S+ ORUFI07G19860.1 340 aAERHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVTLAGSPAAQARLLLGMYPWKGYTLVEEDGCLKLGWKDLSLLTASS 432 699***********************998887.9************************************************************ PP GRAS 373 Wr 374 W+ ORUFI07G19860.1 433 WE 434 *5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.638 | 42 | 414 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.9E-108 | 69 | 434 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MLQGVLSRAP GADAAAMKAK RAADDEEEGG ERERARGKRL AAEGKQGLVV VSTGEEEEAA 60 AETRGLRLLS LLLRCAEAVA MDQLPEARDL LPEIAELASP FGSSPERVAA YFGDALCARV 120 LSSYLGAYSP LALRPLAAAQ SRRISGAFQA YNALSPLVKF SHFTANQAIF QALDGEDRVH 180 VIDLDIMQGL QWPGLFHILA SRPTKPRSLR ITGLGASLDV LEATGRRLAD FAASLGLPFE 240 FRPIEGKIGH VADAAALLGP RHHGEATVVH WMHHCLYDVT GSDAGTVRLL KSLRPKLITI 300 VEQDLGHSGD FLGRFVEALH YYSALFDALG DGAGAAEEEA AERHAVERQL LGAEIRNIVA 360 VGGPKRTGEV RVERWGDELR RAGFRPVTLA GSPAAQARLL LGMYPWKGYT LVEEDGCLKL 420 GWKDLSLLTA SSWEPTDGDA DADVAVAGDT HHESHDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-156 | 74 | 435 | 24 | 379 | Protein SCARECROW |
5b3h_D | 1e-156 | 74 | 435 | 24 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003866 | 0.0 | AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644982.1 | 0.0 | scarecrow-like protein 23 | ||||
Swissprot | Q9FHZ1 | 1e-171 | SCL23_ARATH; Scarecrow-like protein 23 | ||||
TrEMBL | A0A0E0I2G6 | 0.0 | A0A0E0I2G6_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QA15 | 0.0 | A0A0E0QA15_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A0P0X7S9 | 0.0 | A0A0P0X7S9_ORYSJ; Os07g0567700 protein | ||||
STRING | ORUFI07G19860.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS07T0567700-02 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA07G17430.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1371 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 1e-155 | GRAS family protein |
Publications ? help Back to Top | |||
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