PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G27450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 104aa MW: 11260.8 Da PI: 11.9955 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 9.3e-18 | 16 | 66 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp k++ ++lg+f++ae Aa+a++ a+++l+g+ ORUFI06G27450.1 16 RYRGVRKRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEVAARAYDDAARSLRGP 66 59*******.7*********83...36*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.4E-11 | 16 | 65 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.404 | 16 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-21 | 16 | 74 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.8E-33 | 16 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-29 | 16 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.37E-17 | 16 | 73 | No hit | No description |
PRINTS | PR00367 | 4.8E-8 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-8 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MRKSKQPQPQ PSPEIRYRGV RKRPSGRYAA EIRDPAKKTP IWLGTFDSAE VAARAYDDAA 60 RSLRGPTART NFPLAAPGRR PPRPATAAPL SHGAAAPHAP PHPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 16 | 73 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003935 | 1e-126 | AP003935.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0661G04. | |||
GenBank | AP005457 | 1e-126 | AP005457.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0532H03. | |||
GenBank | AP014962 | 1e-126 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641022.1 | 4e-36 | ethylene-responsive transcription factor 3 | ||||
Swissprot | Q9LW49 | 2e-28 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A0E0Q1Y2 | 3e-65 | A0A0E0Q1Y2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G27450.1 | 5e-66 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6102 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 7e-21 | ethylene responsive element binding factor 3 |