PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 683aa MW: 75968.5 Da PI: 6.2926 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.6 | 9.2e-48 | 18 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp+GfrF+Ptdeelv +yLk k++g++++ i++vd+ ++ePwdLp + +k+++ ew+fF++rd+ky+ g+r+nr+t++gyWkatgkd+ + ORUFI06G00070.1 18 LPVGFRFRPTDEELVRHYLKGKIAGRSHPDLLLIPDVDLSTCEPWDLPaMsVIKSDDPEWFFFAPRDRKYPGGHRSNRSTAAGYWKATGKDRLI 111 79*************************999889***************5347777888************************************ PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ g l+g+kktLvf++grap+g +t W+mheyr ORUFI06G00070.1 112 RSRpAGPLIGIKKTLVFHRGRAPRGLRTAWIMHEYRT 148 **988889***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-55 | 8 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.138 | 18 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-26 | 19 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MKQGKVEMTP AVAAAAVLPV GFRFRPTDEE LVRHYLKGKI AGRSHPDLLL IPDVDLSTCE 60 PWDLPAMSVI KSDDPEWFFF APRDRKYPGG HRSNRSTAAG YWKATGKDRL IRSRPAGPLI 120 GIKKTLVFHR GRAPRGLRTA WIMHEYRTTE PHFQSGKNGS FVLYRLFNKH EQDDTHTPAS 180 NLDQQLSTSS QGNPQNGTPA VQPALASIMK DHQTLPSSGF SQLTEIQDAS TSVHDKEQTV 240 AHDDAFLDVL SQLPDLEPEQ RYNGFPNITS PIRPYSDHPF VGNLGEQDLS AHFGSTLSEQ 300 DLQSLLFSPN YTKMDKHPTG NVESNPTASS NNPNNNTLLM DSWRKNDSYQ MLLIQRADNT 360 DATCCSSSIN APQTETSDAN LEARAQSSSM VYSGVAEGSP LCNQDQLHSA FNPHMESQKS 420 GAFCWAGLWT PYPQHWFDTI VEPGRSGMTF SDALKEQGQE QAPSMKHLTA QDLVDPQQGT 480 AARRIRLVCS VERASVSQPV SSHLQSEYEA GSCCNTRNSS NNKKESVRSE DEAGSCCNTG 540 SSSNNHSEEN DDAASQIMVL LQFIDGEPMH IQCKEDTPIQ VDHSVEVMDK LQGFSFHEEM 600 LVHANQPRGT NLKQRLLRVE SRNSNENNVP SLETREQQHA PHIQKWTSSV VRLGWGWQWP 660 ALFVMAGSLL LLVGVWKSLN HTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-42 | 18 | 172 | 15 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064178 | 0.0 | AK064178.1 Oryza sativa Japonica Group cDNA clone:002-104-B01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642953.1 | 0.0 | NAC domain-containing protein 7 | ||||
TrEMBL | A0A0E0PSB2 | 0.0 | A0A0E0PSB2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G00070.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13413 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.3 | 3e-65 | NAC transcription factor-like 9 |