PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI05G15290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 80aa MW: 8738.08 Da PI: 11.007 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 34.9 | 2.1e-11 | 38 | 75 | 337 | 374 |
GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++ + + dg++v ee+g ++l+W+dr+L+svSaWr ORUFI05G15290.1 38 TRRVAQGLGCDGFKVREEKGNFFLCWQDRALFSVSAWR 75 5677788899***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 7.2E-9 | 38 | 75 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MAPLRGAKRR RKAAAEKKAA MAAAAVAEGP GGEGQLHTRR VAQGLGCDGF KVREEKGNFF 60 LCWQDRALFS VSAWRARCFD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287540 | 3e-55 | AK287540.1 Oryza sativa Japonica Group cDNA, clone: J065011K01, full insert sequence. | |||
GenBank | AP003259 | 3e-55 | AP003259.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466H10. | |||
GenBank | AP003458 | 3e-55 | AP003458.4 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0701E03. | |||
GenBank | AP004687 | 3e-55 | AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04. | |||
GenBank | AP014957 | 3e-55 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AP014962 | 3e-55 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610769.1 | 1e-20 | scarecrow-like protein 3 isoform X1 | ||||
TrEMBL | A0A0E0PLN3 | 1e-49 | A0A0E0PLN3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI05G15290.1 | 2e-50 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 5e-14 | scarecrow-like 3 |