PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G11600.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 111aa    MW: 11967.9 Da    PI: 10.5759
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G11600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.11.1e-133880244
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     rie+  +r + f kR++g+ KK eEL vLCda v  +++s +g
  ORUFI04G11600.1 38 RIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 80
                     8**************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.5492980IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-102991IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-103151IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-143185IPR002100Transcription factor, MADS-box
PfamPF003197.2E-173880IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-105166IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-106687IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MAAARGGARR ISGLRRVGLG GRDWEEGWGG GGRVVLRRIE DRVRRGICFR KRLAGLEKKV  60
EELAVLCDAH VGFVVLSCSG DDANPHHFAA PATYAPFLSL PLPLLPPNLL G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149601e-174AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-174CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880634.12e-32MADS-box transcription factor 33-like isoform X3
TrEMBLA0A0E0P8A43e-72A0A0E0P8A4_ORYRU; Uncharacterized protein
STRINGORUFI04G11600.15e-73(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154931117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.15e-10MIKC_MADS family protein