PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G09410.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 431aa    MW: 46722.1 Da    PI: 9.9475
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G09410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.5e-1424121499
                      E-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
               B3   4 vltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                      vl+ps+  k   +++  + a++      gg  ++  t ++ ++ g+ W+v + +r ++gr +l++GW eF+ a+gL +g fvv+++ g   ++ 
  ORUFI04G09410.1  24 VLVPSSFRK---MRICDELAAQLgvgvgGGGAPRAATARVASPLGKAWDVGV-VRDGDGRAFLGRGWAEFAAAHGLGVGWFVVLRHGGGgGGGV 113
                      555555444...568888887779999955566888****************.688888899************************98879998 PP

                      .EEEEE-S CS
               B3  92 lvvkvfrk 99 
                      l v +f++
  ORUFI04G09410.1 114 LAVEAFDT 121
                      88888876 PP
2B347.14.4e-151572361496
                      T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      + +++p kf++++  g++ +s + ++ ++ g+sW+v+l  +k +++++l++GW +  + +g+  gD+v+F+++g+  f  +++v
  ORUFI04G09410.1 157 DKMRIPDKFVRDYiTGENLNSNMAIILSPLGKSWRVEL--DKDQSGVFLGGGWLQLLSFHGISRGDVVIFRYEGNLVF--KISV 236
                      5699**********555567889999************..*******************************9986666..5555 PP
3B378.66.5e-25324418184
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS............-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg............rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvv 81 
                      ++k++++++vl++++l+l ++f+e++g+ +e+s+tl++ d+++            rsWev+   r+++++ y+l++GW++F+++ng+++gD++v
  ORUFI04G09410.1 324 WIKKEINEYVLERCILSLARTFCESIGLAEESSITLMMVDTTStqgdqggsssssRSWEVTG--RRYKDAcYLLGAGWRRFCEDNGVRSGDVCV 415
                      789*************************************99999*****************..9999999*********************** PP

                      EEE CS
               B3  82 Fkl 84 
                      F++
  ORUFI04G09410.1 416 FTV 418
                      *95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.01221122IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-1222122IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-923105No hitNo description
Gene3DG3DSA:2.40.330.109.2E-1223124IPR015300DNA-binding pseudobarrel domain
PfamPF023629.8E-1223120IPR003340B3 DNA binding domain
PROSITE profilePS508639.78465122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-18140241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-19141240IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.07144240IPR003340B3 DNA binding domain
CDDcd100172.76E-16145237No hitNo description
SMARTSM010198.4E-14147240IPR003340B3 DNA binding domain
PfamPF023627.7E-13157232IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-14320429IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-17321429IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.928324431IPR003340B3 DNA binding domain
PfamPF023621.4E-14324419IPR003340B3 DNA binding domain
SMARTSM010197.0E-5325429IPR003340B3 DNA binding domain
CDDcd100171.96E-7329417No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGSRGDHGGG GGGRGAARAT QLKVLVPSSF RKMRICDELA AQLGVGVGGG GAPRAATARV  60
ASPLGKAWDV GVVRDGDGRA FLGRGWAEFA AAHGLGVGWF VVLRHGGGGG GGVLAVEAFD  120
TTCCLRVFGA PPAEAGRATD TSRKPQFLTV LLPGIMDKMR IPDKFVRDYI TGENLNSNMA  180
IILSPLGKSW RVELDKDQSG VFLGGGWLQL LSFHGISRGD VVIFRYEGNL VFKISVFGPN  240
GRQKDFKAKG ISIHQGTGEQ QEAPSFSRRK CNNKKKSRFG EDDGNQQEMP CSRKGSGNKG  300
RTSDRETKRM RKTRSVYEIG PRSWIKKEIN EYVLERCILS LARTFCESIG LAEESSITLM  360
MVDTTSTQGD QGGSSSSSRS WEVTGRRYKD ACYLLGAGWR RFCEDNGVRS GDVCVFTVLD  420
TTLWRVDIER C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-168CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551081e-168CR855108.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0111I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881011.10.0putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS750.0Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLB8ASH00.0B8ASH0_ORYSI; Uncharacterized protein
STRINGORUFI04G09410.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.16e-17B3 family protein