PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G37050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 652aa MW: 67633.9 Da PI: 7.2685 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39 | 2e-12 | 304 | 360 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g ORUFI03G37050.1 304 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 360 78*******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 47.9 | 3.4e-15 | 403 | 454 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I +s +k +lg+f t eeAa+a++ a+ k++g ORUFI03G37050.1 403 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 454 57****************999754...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.69E-17 | 304 | 368 | No hit | No description |
SuperFamily | SSF54171 | 2.55E-14 | 304 | 369 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-9 | 304 | 360 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.3E-23 | 305 | 374 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.359 | 305 | 368 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-12 | 305 | 369 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 306 | 317 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.71E-23 | 403 | 464 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-18 | 403 | 463 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-10 | 403 | 454 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-34 | 404 | 468 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-18 | 404 | 462 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 404 | 462 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 444 | 464 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MASGNSSSSS GSMAATAGGV GGWLGFSLSP HMATYCAGGV DDVGHHHHHH VHQHQQQHGG 60 GLFYNPAAVA SSFYYGGGHD AVVTSAAGGG SYYGAGFSSM PLKSDGSLCI MEALRGGDQE 120 QQGVVVSASP KLEDFLGAGP AMALSLDNSA FYYGGHGHHQ GHAQDGGAVG GDPHHGGGGF 180 LQCAVIPGAG AGHDAALVHD QSAAAVAAGW AAMHGGGYDI ANAAADDVCA AGPIIPTGGH 240 LHPLTLSMSS AGSQSSCVTV QAAAAGEPYM AMDAVSKKRG GADRAGQKQP VHRKSIDTFG 300 QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE GQTRKGRQGG YDMEEKAARA YDLAALKYWG 360 PSTHINFPLE DYQEELEEMK NMSRQEYVAH LRRKSSGFSR GASIYRGVTR HHQHGRWQAR 420 IGRVSGNKDL YLGTFSTQEE AAEAYDVAAI KFRGLNAVTN FDITRYDVDK ILESSTLLPG 480 ELARRKGKVG DGGGAAAVAD AAAALVQAGN VAEWKMATAA ALPAAARTEQ QQQHGHGGHQ 540 HHDLLPSDAF SVLQDIVSTV DAAGAPPRAP HMSMAATSLG NSREQSPDRG VGGGGGGGVL 600 ATLFAKPAAA SKLYSPVPLN TWASPSPAVS SVPARAGVSI AHLPMFAAWT DA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241712 | 0.0 | AK241712.1 Oryza sativa Japonica Group cDNA, clone: J065197H24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879550.1 | 0.0 | AP2-like ethylene-responsive transcription factor CRL5 isoform X2 | ||||
Swissprot | Q84Z02 | 1e-160 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A0E0P1U9 | 0.0 | A0A0E0P1U9_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q6AU52 | 0.0 | Q6AU52_ORYSJ; Putative AP2/EREBP transcription factor | ||||
STRING | ORUFI03G37050.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-129 | AP2 family protein |
Publications ? help Back to Top | |||
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