PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI03G16400.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 354aa MW: 39403.6 Da PI: 7.6653

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI03G16400.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.7	1.5e-34	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerFveav+qLGG+ekAtPkti++lm+v+gLtl+h+kSHLQkYRl ORUFI03G16400.1 47 KPRLKWTPELHERFVEAVNQLGGPEKATPKTIMRLMGVPGLTLYHLKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.874	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.4E-33	45	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.45E-18	46	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-24	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	9.1E-11	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	3.3E-25	149	195	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MYHHQQQLQS HNQLLPSRQS FPSERHLLMQ GGSVSGESGL VLSTDAKPRL KWTPELHERF 60 VEAVNQLGGP EKATPKTIMR LMGVPGLTLY HLKSHLQKYR LSKNLHAQAN AGNVKNALVC 120 TTATEKPSEA NGSPVSHLNL GTQTNKSVHI GEALQMQIEV QRRLHEQLEV QRHLQLRIEA 180 QGKYLQSVLE KAQETLAKQN AGSVGLETVK MELSELVSKV STECLQHAFS GFEIESSQML 240 QGHTMHLGDG SVDSCLTACD GSQKDQDILS ISLSAQKGKE IGCMSFDMHV KERGSEDLFL 300 DKLNRRPSNH PERCERRGGF SMSCQTANLD LNMNDTYDGP KHCKKFDLNG FSWA

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MYHHQQQLQS HNQLLPSRQS FPSERHLLMQ GGSVSGESGL VLSTDAKPRL KWTPELHERF  60
VEAVNQLGGP EKATPKTIMR LMGVPGLTLY HLKSHLQKYR LSKNLHAQAN AGNVKNALVC  120
TTATEKPSEA NGSPVSHLNL GTQTNKSVHI GEALQMQIEV QRRLHEQLEV QRHLQLRIEA  180
QGKYLQSVLE KAQETLAKQN AGSVGLETVK MELSELVSKV STECLQHAFS GFEIESSQML  240
QGHTMHLGDG SVDSCLTACD GSQKDQDILS ISLSAQKGKE IGCMSFDMHV KERGSEDLFL  300
DKLNRRPSNH PERCERRGGF SMSCQTANLD LNMNDTYDGP KHCKKFDLNG FSWA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-21	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100282	0.0	AK100282.1 Oryza sativa Japonica Group cDNA clone:J023074M06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627784.1	0.0	myb-related protein 2 isoform X1
Swissprot	Q9FK47	1e-102	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A0E0NUF9	0.0	A0A0E0NUF9_ORYRU; Uncharacterized protein
STRING	ORUFI03G16400.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	2e-94	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]