PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G05750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 322aa MW: 35271.5 Da PI: 9.1824 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 125.3 | 2.6e-39 | 63 | 140 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC ++l +k+yhr+h+vCe+hsk p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL +hn+rrrk+q+ ORUFI02G05750.1 63 RCQVEGCGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLYDHNARRRKPQT 140 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.9E-33 | 56 | 125 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.667 | 61 | 138 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.09E-38 | 62 | 144 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-30 | 64 | 137 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MDWMPPPKPT SPRSPPLLWD WADAAVPGSS SGEVSAAAAH PGRRRKEKRG RAEEGGGGGG 60 EVRCQVEGCG VELVGVKDYH RKHRVCEAHS KFPRVVVAGQ ERRFCQQCSR FHALSEFDQK 120 KRSCRRRLYD HNARRRKPQT DVFSYASARP PSSLLFDDNR QISFVWNKAP LSHVRPFAIS 180 PWESSSEVGT TDGHIYLDKS HISKSLPAFN TDIDELLPMK GPDASLTASK FDGAPDLQRA 240 LSLLSSSSCG LPDPVQQASR VIQFTGASQN NRELPPLNGG NSASASCANV QTIAQPAQLV 300 RFTMDASSNA CQSNFFGLNQ IN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-24 | 57 | 137 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 47 | RRRKEK |
2 | 119 | 136 | KKRSCRRRLYDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT828741 | 0.0 | CT828741.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623076.1 | 0.0 | squamosa promoter-binding-like protein 4 isoform X2 | ||||
Swissprot | Q6H509 | 1e-142 | SPL4_ORYSJ; Squamosa promoter-binding-like protein 4 | ||||
TrEMBL | A0A0E0NAK1 | 0.0 | A0A0E0NAK1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G05750.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6271 | 29 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 7e-38 | squamosa promoter binding protein-like 2 |
Publications ? help Back to Top | |||
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