PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G40090.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 560aa    MW: 58213.6 Da    PI: 8.0504
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G40090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS231.53.9e-711575584374
             GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilkf 93 
                       L +cAea++++  + a+a La +  +as+dgd++qR+aa f+eA+a+ + r + ++++al ps++          e+ +a++ f +++P+l +
  ORUFI01G40090.1 157 HLRRCAEALAASRPADADAELASIARMASSDGDAVQRVAAAFAEAMARVVIRPWRGVSAALFPSDAGAAGdaltAWEAEFARQSFLNLCPLLHL 250
                      6889*********************************************************66666544346767778888999********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      + ++ N+ Ile + +++ +Hi+D++  + ++W+ Llq La+R+ +  p lR+T v++    +k+ l + ++ La   ++ gvp++ ++ v++++
  ORUFI01G40090.1 251 AAVAVNEIILETTRNDKFIHIVDLGGIHHAHWVELLQGLATRRaAVRPCLRLTIVHE----HKHFLGQAAQVLAAESDRHGVPLDLHI-VESSV 339
                      ****************************************98867799*********....99************************9.799** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll.........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                      e+l+l++L v+++ a+++ + lqlhrl+                           +++++s+ d++L+ +  lsP+ ++++e+ea+h  +sF +
  ORUFI01G40090.1 340 EALKLDALGVRSDHAVVIVSTLQLHRLVgagilsttappspaaaaaasmitspLPPANMSSKVDRLLRGFHLLSPRAIILTENEANHFVPSFTD 433
                      **************************************************9987788888899******************************* PP

             GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplse..kaakqaklllrkvks 346
                      rf++al yy  lf ++e+  ++++ er+  Er ll++ei++v+ac ++  r +rhetl++W  r+++aGF  +p  +  +aa  ++++ ++ ++
  ORUFI01G40090.1 434 RFASALPYYEQLFAAMEEA-GAATVERKAAERYLLREEIKDVIACDHDGpRWARHETLGRWVVRMGAAGFALAPAITvvTAAGRVRAVAARLPG 526
                      ****************887.78999*********************9988********************988765511445555666666654 PP

             GRAS 347 dg....yrveeesgslvlgWkdrpLvsvSaWr 374
                       g    y v e  g+l+l  +++p++ vSaWr
  ORUFI01G40090.1 527 GGderrYGVTEGGGWLILNREEKPMFCVSAWR 558
                      334566*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.973128532IPR005202Transcription factor GRAS
PfamPF035141.3E-68157558IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MVAQAATAAT TTTAAATTAA VPMTNFQLFG SMVPVPVASM ATATAPAAVA AADNGGHGSS  60
SASQNASGSG EGQGGSMSLS LQLRPLGSTP TAAVAVSVPP MAAAPMMAGP AAAAPAPAPP  120
LATMAVAQNA SLAAVASALA AHRRNQATHR SAALHGHLRR CAEALAASRP ADADAELASI  180
ARMASSDGDA VQRVAAAFAE AMARVVIRPW RGVSAALFPS DAGAAGDALT AWEAEFARQS  240
FLNLCPLLHL AAVAVNEIIL ETTRNDKFIH IVDLGGIHHA HWVELLQGLA TRRAAVRPCL  300
RLTIVHEHKH FLGQAAQVLA AESDRHGVPL DLHIVESSVE ALKLDALGVR SDHAVVIVST  360
LQLHRLVGAG ILSTTAPPSP AAAAAASMIT SPLPPANMSS KVDRLLRGFH LLSPRAIILT  420
ENEANHFVPS FTDRFASALP YYEQLFAAME EAGAATVERK AAERYLLREE IKDVIACDHD  480
GPRWARHETL GRWVVRMGAA GFALAPAITV VTAAGRVRAV AARLPGGGDE RRYGVTEGGG  540
WLILNREEKP MFCVSAWRRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-271515581375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1057670.0AC105767.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B11, complete sequence.
GenBankAC1362180.0AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638611.10.0scarecrow-like protein 3
TrEMBLA0A0E0N4S00.0A0A0E0N4S0_ORYRU; Uncharacterized protein
STRINGORUFI01G40090.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169421011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.14e-32scarecrow-like 3