PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA12G0030500.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 489aa MW: 52886.3 Da PI: 7.3453

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA12G0030500.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.7	7.9e-11	185	211	7	33
HHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLee 33 rr+++NReAAr+sR+RKka+i++Le ORGLA12G0030500.1 185 MRRLAQNREAARKSRLRKKAYIQQLES 211 69***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.8E-7	177	225	No hit	No description
SMART	SM00338	1.8E-5	178	254	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.128	181	225	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.0E-6	183	219	No hit	No description
Pfam	PF00170	1.4E-7	184	212	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	186	201	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.5E-30	263	337	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MGEARRGQNP HHVLGYGFHG TTLPNSMASA NLFEQGGGGG GGAAYFGELE EALVHQVAIL 60 RRRAQQTATT TTSHHGHTTP FSTAAAAATA TATARPPATL DIFPSWPMRR SSLPTPKDGC 120 SNVTADTTDS ESSSKNNGDQ GAAAADMASQ FDQIPQQQQK QHKKMAASST HSDHRMTKTL 180 DPKIMRRLAQ NREAARKSRL RKKAYIQQLE SSKLRLAQME QDLERARSQG LLLGGSPGGN 240 TSAGAAMFDA EYGRWLEDGG RRMAELHGGL HAHLPDGDLR AIVDDALAHY DELFRLRAAA 300 AKADVFHLIT GTWATPAERC FLWMGGFRPS DLLKTVAPQL DPLTEQQVVG ICSLQQSSQQ 360 AEEALSQGLE QLHQSLAETV ANGGSVVDEA SLGSFMGYMA LAVGKLSNLE GFVIQADNLR 420 QQTLHQMHRI LTIRQAARCF LAIGEYHNRL RALSSLWASR PREILVADEG NCGELSIAAQ 480 PSESQFSAF

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MGEARRGQNP HHVLGYGFHG TTLPNSMASA NLFEQGGGGG GGAAYFGELE EALVHQVAIL  60
RRRAQQTATT TTSHHGHTTP FSTAAAAATA TATARPPATL DIFPSWPMRR SSLPTPKDGC  120
SNVTADTTDS ESSSKNNGDQ GAAAADMASQ FDQIPQQQQK QHKKMAASST HSDHRMTKTL  180
DPKIMRRLAQ NREAARKSRL RKKAYIQQLE SSKLRLAQME QDLERARSQG LLLGGSPGGN  240
TSAGAAMFDA EYGRWLEDGG RRMAELHGGL HAHLPDGDLR AIVDDALAHY DELFRLRAAA  300
AKADVFHLIT GTWATPAERC FLWMGGFRPS DLLKTVAPQL DPLTEQQVVG ICSLQQSSQQ  360
AEEALSQGLE QLHQSLAETV ANGGSVVDEA SLGSFMGYMA LAVGKLSNLE GFVIQADNLR  420
QQTLHQMHRI LTIRQAARCF LAIGEYHNRL RALSSLWASR PREILVADEG NCGELSIAAQ  480
PSESQFSAF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA12G0030500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101620	0.0	AK101620.1 Oryza sativa Japonica Group cDNA clone:J033052J02, full insert sequence.
GenBank	FJ750929	0.0	FJ750929.1 Oryza sativa clone KCS115G01 DNA-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619722.1	0.0	transcription factor TGAL11
Swissprot	Q2QXL0	0.0	TGL11_ORYSJ; Transcription factor TGAL11
TrEMBL	I1R449	0.0	I1R449_ORYGL; Uncharacterized protein
STRING	ORGLA12G0030500.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-129	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]