PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0119400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 402aa    MW: 42334.2 Da    PI: 4.7151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0119400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09188235455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  ORGLA09G0119400.1 188 SHSLAERVRREKISQRMKVLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 235
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.88E-10182239No hitNo description
SuperFamilySSF474595.89E-17182253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-17184252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6188235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDSDYVAGLL MSAAAAGLDL GVLDGGGGAF LETLCGGPGF AERAARLCGG GGGGGAGLFG  60
LPAAGNAERG GCSREGSSVS DPAWAHATGG GGDNARKRKA PASAAAGKDK DAVVGGGSSP  120
CEVGEAKAPD SKKCKAEVNP KVEEAASDGS VGDRVQKQGK GKNSSKPAAE PPKDYVHVRA  180
RRGQATDSHS LAERVRREKI SQRMKVLQDL VPGCNKVVGK ALMLDEIINY VQSLQQQVEF  240
LSMKLATVNP QLDFGNLSTL LQKDMFQSCG PSVNSVFPLE SAGTAFPFCD QADFFQSFGL  300
GAMENQCSLD LANTALPHTG STQYAFQKQV IAALKNLQST EQMVLTCIYD DNSVCLWFSF  360
QQRDLWEDNA FQYNDEQSQE DAVSAPNFDG QLQAADHTEI EF
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0119400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0590360.0AK059036.1 Oryza sativa Japonica Group cDNA clone:001-021-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651378.10.0transcription factor BHLH089-like
SwissprotQ9SRT21e-58BH062_ARATH; Transcription factor bHLH62
TrEMBLI1QQ650.0I1QQ65_ORYGL; Uncharacterized protein
STRINGORGLA09G0119400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.29e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]