PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA09G0097200.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 376aa MW: 39935.2 Da PI: 9.4665

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA09G0097200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.3	8e-14	297	347	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ Nk+L + + ++ ORGLA09G0097200.1 297 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEMNKELERKQADIMEM 347 79************************************9998765555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.4E-11	293	358	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.714	295	346	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-13	297	345	No hit	No description
SuperFamily	SSF57959	5.13E-10	297	345	No hit	No description
CDD	cd14707	5.68E-23	297	349	No hit	No description
Pfam	PF00170	1.3E-11	297	347	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	300	315	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MLTDRWGGRR EAMEFGNGGS SSSERRAAAE GATLARQGSV YSLTFDEFQS ALAGGGGGGG 60 GGSGFGKDFG SMNMDELLRS IWTAEESQAM ASASGSAAGV GVAVGAPPTS LQRQGSLTLP 120 RTLSAKTVDE VWRNLVRDEP PPVGAADGGD MPPQRQSTLG EMTLEEFLVR AGVVRENPPA 180 APPPVPPPMP PRPVPVVPKT TAFLGNFPGA NDAGAAALGF APLGMGDPAL GNGLMPRAVP 240 VGLPGAAVAM QTAVNQFDSG DKGNSDLSSP TEPMPYSFEG LVRGRRNGGG VEKVVERRQR 300 RMIKNRESAA RSRARKQAYT MELEAEVQKL KEMNKELERK QADIMEMQKN EVEEMIKDPF 360 GRRKRLCLRR TLTGPW

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MLTDRWGGRR EAMEFGNGGS SSSERRAAAE GATLARQGSV YSLTFDEFQS ALAGGGGGGG  60
GGSGFGKDFG SMNMDELLRS IWTAEESQAM ASASGSAAGV GVAVGAPPTS LQRQGSLTLP  120
RTLSAKTVDE VWRNLVRDEP PPVGAADGGD MPPQRQSTLG EMTLEEFLVR AGVVRENPPA  180
APPPVPPPMP PRPVPVVPKT TAFLGNFPGA NDAGAAALGF APLGMGDPAL GNGLMPRAVP  240
VGLPGAAVAM QTAVNQFDSG DKGNSDLSSP TEPMPYSFEG LVRGRRNGGG VEKVVERRQR  300
RMIKNRESAA RSRARKQAYT MELEAEVQKL KEMNKELERK QADIMEMQKN EVEEMIKDPF  360
GRRKRLCLRR TLTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA09G0097200.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065873	0.0	AK065873.1 Oryza sativa Japonica Group cDNA clone:J013049N23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612550.1	0.0	bZIP transcription factor TRAB1-like
Swissprot	Q6ZDF3	1e-119	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	I1QPJ3	0.0	I1QPJ3_ORYGL; Uncharacterized protein
STRING	ORGLA09G0097200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.2	4e-33	ABRE binding factor 4

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]