PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA08G0211300.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 327aa MW: 34547.1 Da PI: 8.4253

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA08G0211300.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.8	7.4e-16	241	292	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+ ee+ ++ ORGLA08G0211300.1 241 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQKKQEEIMEMQ 292 79********************************************999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-14	237	301	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.208	239	290	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-12	241	291	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.0E-15	241	290	No hit	No description
Pfam	PF00170	3.3E-14	241	293	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.93E-25	241	293	No hit	No description
PROSITE pattern	PS00036	0	244	259	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MGGGLGKDFG SMNMDELLRS IWTAEESQAM ASAAAAAAEG GLQRQGSLTL PRTLSVKTVD 60 EVWRDFEREA SPGAAAADGG GGGGEQQQPR RQPTLGEMTL EEFLVRAGVV RENTAAAAAM 120 VAAAAAPPVA PRSIPAVNNS SIFFGNYGGV NDAAAAAAGA MGFSPVGIGD PTMGNGLMSG 180 VAGIGGGAIT VAPVDTSVGQ MDSAGKGDGD LSSPMAPVPY PFEGVIRGRR SGGNVEKVVE 240 RRQRRMIKNR ESAARSRARK QAYTMELEAE VQKLKEQNME LQKKQEEIME MQKNFFPEMQ 300 KNQVLEAVNN PYGQKKRCLR RTLTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA08G0211300.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT037117	0.0	KT037117.1 Oryza sativa Indica Group cultivar Nonabokra abscisic acid inducible bZIP protein (TRAB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650926.1	0.0	bZIP transcription factor TRAB1
Swissprot	Q6ZDF3	0.0	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	I1QL12	0.0	I1QL12_ORYGL; Uncharacterized protein
STRING	ORGLA08G0211300.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.3	2e-40	ABRE binding factor 4

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]