PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA08G0152800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 353aa MW: 37351.1 Da PI: 9.9175 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.6e-18 | 172 | 226 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k ORGLA08G0152800.1 172 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 226 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128.4 | 3.1e-41 | 172 | 262 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk ORGLA08G0152800.1 172 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR-ALK 262 69*************************************************************************************9.665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-18 | 156 | 226 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.01E-18 | 159 | 229 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 168 | 228 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-16 | 170 | 232 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.7E-15 | 172 | 226 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.15E-16 | 172 | 229 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 203 | 226 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.5E-25 | 228 | 271 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.0E-10 | 228 | 262 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
WSWGXAWGMR XPWRMAGGRS WFLGSGLGLG LGXGEERRRR GGRREDVVGA GRWAAMAAAS 60 PEPSVRLSLV SSLGLHWPSE TGRSEAAARG FDVNRAPSVA AGAPGMEDDE EGPGAAPALS 120 SSPNDSGGSF PLDLSGHGLR GHAEAAAQGG GGGGGERSSS RASDDDEGAS ARKKLRLSKE 180 QSAFLEESFK EHSTLNPKQK VALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC 240 CETLTEENRR LHKELAELRA LKTARPFYMH LPATTLSMCP SCERVASNPA TASTSAPAAA 300 TSPAAAPTAA ARTAVASPEP HRPSSFAALF AAPLGFPLTA AQPRPPPPAS NCL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 220 | 228 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA08G0152800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241196 | 0.0 | AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648883.1 | 1e-175 | homeobox-leucine zipper protein HOX27 isoform X2 | ||||
Swissprot | A2YW03 | 1e-177 | HOX27_ORYSI; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | I1QJC7 | 0.0 | I1QJC7_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA08G0152800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 5e-71 | homeobox from Arabidopsis thaliana |