PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0179200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 540aa    MW: 59741.5 Da    PI: 4.5529
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0179200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.28.8e-143478348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +W++eEd+ l   ++++G+++W+ Ia+ +   +t+ qc+ rw++yl
  ORGLA07G0179200.1 34 SWSAEEDDVLRTQIALHGTDNWTIIAAQFK-DKTARQCRRRWYNYL 78
                       6****************************9.**************7 PP
2Myb_DNA-binding41.62.8e-1384127146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g W+ eEd+ll +a k lG++ W+ Ia+ +  gRt++ +k+r+ +
  ORGLA07G0179200.1  84 KGGWSREEDLLLCEAQKVLGNK-WTEIAKVVS-GRTDNAVKNRFST 127
                        688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.8092782IPR017930Myb domain
SMARTSM007177.2E-133180IPR001005SANT/Myb domain
SuperFamilySSF466892.55E-2631125IPR009057Homeodomain-like
CDDcd001676.75E-133478No hitNo description
PfamPF139215.8E-153594No hitNo description
Gene3DG3DSA:1.10.10.601.1E-183585IPR009057Homeodomain-like
PROSITE profilePS5129417.36783133IPR017930Myb domain
SMARTSM007173.5E-1383131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-1986132IPR009057Homeodomain-like
CDDcd001672.52E-987128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MATGPDLTPP AAAAAASAEA PSASAAKKDR HIVSWSAEED DVLRTQIALH GTDNWTIIAA  60
QFKDKTARQC RRRWYNYLNS ECKKGGWSRE EDLLLCEAQK VLGNKWTEIA KVVSGRTDNA  120
VKNRFSTLCK RRAKDDELFK ENGSLCSSAS AKRALAQTEC LTSGASGSAP PIKQMRPCNS  180
DFKENMTPNM RLVGQDKSTQ DSRQPLAIVY QNNQDNMNTM DTQNLVAKTA AKQLFAGEHD  240
CVKHEGNFLN KDDPKIVTLL QRADLLCSLA TKINTENTSQ SMDEAWQQLQ HHLDKKDDND  300
MSESSMSGMA SLLEDLDDLI VDPYENEEEE DQNLREQNEQ IDMENKQNSS QTSMEVTSQM  360
VPDNKMEDCP NDKSTEDNNM EPCPGEDIPT SENLTEAAIE DSLLQCVEYS SPVHTVIQAK  420
TDAEIAASEN LSEVLEHNRL QCIKLASPAQ TTTPVEANAE TPASEKLSEV VKCKNPPRMG  480
FTSPAHTVPT FLPYADDMPT PKFTASERNF LLSVLELTSP GSRPDTSQQP SCKRALLNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-283513210107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0179200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634260.0AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647542.10.0transcription factor MYB124 isoform X2
TrEMBLI1QCF00.0I1QCF0_ORYGL; Uncharacterized protein
STRINGORGLA07G0179200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.21e-82MYB family protein