PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0102900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 125aa    MW: 14400.9 Da    PI: 6.3953
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0102900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.91.3e-2156107556
                        SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         ++t++q++ Le++Fe++ y+  ++r eLAkklg++erqVk+WFqNrR+++k
  ORGLA07G0102900.1  56 KRHTDDQIKHLESVFERCTYLGGNQRVELAKKLGMEERQVKFWFQNRRTRKK 107
                        579***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-2144107IPR009057Homeodomain-like
PROSITE profilePS5007116.7349109IPR001356Homeobox domain
SMARTSM003891.8E-1651113IPR001356Homeobox domain
SuperFamilySSF466892.69E-1951107IPR009057Homeodomain-like
CDDcd000862.61E-1853107No hitNo description
PfamPF000465.6E-1956107IPR001356Homeobox domain
PRINTSPR000317.5E-78089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000317.5E-789105IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MDNGSQQESS DLHVHHLPIV SVIGVEDHTE EADDAAVDYH DDGSEGQDEV SNKRMKRHTD  60
DQIKHLESVF ERCTYLGGNQ RVELAKKLGM EERQVKFWFQ NRRTRKKVAT WVDKRQLSVR  120
NGGSP
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0102900.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126151e-100CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019458276.12e-16PREDICTED: homeobox-leucine zipper protein HDG11-like isoform X2
TrEMBLI1QA875e-88I1QA87_ORYGL; Uncharacterized protein
STRINGORGLA07G0102900.18e-89(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149301619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.19e-17HD-ZIP family protein