PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0273000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 518aa    MW: 56317 Da    PI: 7.431
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0273000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.93.1e-16182221140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC+dCkN e
  ORGLA06G0273000.1 182 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCQDCKNFE 221
                        589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-679137IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163432.59880222IPR005172CRC domain
PfamPF036382.4E-4112134IPR005172CRC domain
SMARTSM011141.5E-18182223IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12185220IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MMEKKQMQQQ PQQPESEPEP AAPAPAAAAA EAKATPPQPQ PQQKPAAPVQ PQMPTPRPWP  60
VAFIPPKPVA EIKSTPSTKR KKHCNCKNSQ CLKLACSSIL DLFTGQIDQL YGYCECFAAG  120
LYCDGCHCKQ CGNYVGNESA RQEAINSTKQ RNPKAFQPKI ENGSNALNLR KDDAGAPASL  180
PKHNKGCHCK KSGCLKKYCE CFQANILCSK NCKCQDCKNF EGSEELRLIT QGDNSSDRNN  240
IQHAANVALN GAIGSSGYRY SPVRRKRPPE DHLYQKLNGE GSTMQTQFQE ANHVDSSEIT  300
SSTGLEGCYS NYQSRSNVVY RSALANTISP TDATGLAKHL VIVCRKAADA FLMTAENKGE  360
MEVEREIHTD SDGATNMDQQ NGGDFGPCCN SLEDSRPASP GTQALMCDEQ GSTFGTDYRI  420
SFPVALRDQD TSELNAQQEK AVLTGFRDYL RTVITRGKIN EANRSSEAAM QLDTRKHDES  480
ATILPPLNAV EKEKLKVPDG PESPKASPSA SNCGGQAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-22742314132Protein lin-54 homolog
5fd3_B8e-22742314132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0273000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8362560.0CT836256.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111J17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641295.10.0protein tesmin/TSO1-like CXC 7
TrEMBLI1Q6G70.0I1Q6G7_ORYGL; Uncharacterized protein
STRINGORGLA06G0273000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-82Tesmin/TSO1-like CXC domain-containing protein