PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0148100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 541aa    MW: 58104 Da    PI: 6.5485
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0148100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.8e-31125178255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  ORGLA06G0148100.1 125 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 178
                        8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.601121181IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-29121179IPR009057Homeodomain-like
SuperFamilySSF466895.38E-14124179IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-22125180IPR006447Myb domain, plants
PfamPF002499.5E-9126177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MGEVKEKEVV EIFEHDHDNK IRSPENSVPP AMVLDLNEGF GEGSEEGGVG EDGDEEDDDE  60
DDDDDDDGGS TSEVAVGGRS SSNNSSTNHN SGSDKDHDMN SSSSKADGGG DRVPTVRQYN  120
RSKLPRLRWT PDLHMAFVHA VERLGGQERA TPKLVLQMMN VRGLSIAHVK SHLQMYRSKK  180
LDHESGHERG AISSVFSPME FHMRRGDHRF HHHDMFFQRA AAAGVSPFSS RMLHESGGGF  240
FASRNPGLPE SSRLYGLFQR RQQAPMQKFD FKNCNSFSRN QEWAFNQQHA AARAAGAVNG  300
HGPAKGLIHE MIFRKEGKPT SHLFDVRDAI ASTRVTSATT AAAADHRLDG AGKAGNFDWI  360
GSSSSRPLTR TMSAAAAATM GDHHHLRWRG GAAGSGNTTA SSDPVVASEA ALGSLLERAK  420
TKATEAMRLE TPVKMTAAAV AAEEINGRTP DLQLSLSPNA GDHRSAGKKR KFLSEQEVDS  480
DKQQLPLTLS LSLRGGGDNG GGGGGEAAGR LEEEMTGSSS SKKAALGLST LDLTMSIKAL  540
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-18126180357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-18126180357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-18126180357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-18126180357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0148100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0736060.0AK073606.1 Oryza sativa Japonica Group cDNA clone:J033048N17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641453.10.0uncharacterized protein LOC4341235 isoform X1
TrEMBLI1Q2W80.0I1Q2W8_ORYGL; Uncharacterized protein
STRINGORGLA06G0148100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-34G2-like family protein