PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0074000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 22224.6 Da PI: 4.5744 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.2 | 9.7e-14 | 13 | 63 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr + +g+ vAeIr ps+ r r++lg+++t+e+Aa+a +aa l+g ORGLA06G0074000.1 13 KKYKGVRLRQ-WGKXVAEIRLPSS---RERVWLGSYDTPEKAARAFDAAFVFLRG 63 59*****998.**********965...4********************9887777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.58E-20 | 13 | 77 | No hit | No description |
PROSITE profile | PS51032 | 19.467 | 14 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.95E-16 | 14 | 75 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-23 | 14 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-23 | 14 | 81 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.4E-7 | 14 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-8 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-8 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MQTKNTAAPA PEKKYKGVRL RQWGKXVAEI RLPSSRERVW LGSYDTPEKA ARAFDAAFVF 60 LRGAGAADAA GLNFADSPLP VVARTRDLRE VYAFAVSHAN RPPPVAGETA ATALAAMAAL 120 EHNEVRENIA PSSPLSAVQV AAPPAGSFDW SQLMANSPPL YSPIVIGIHA YDDLAVWPTT 180 QPVEEFSEED NENEGATSDE LWSFDV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0074000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005545 | 0.0 | AP005545.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0638H11. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882388.1 | 1e-144 | ethylene-responsive transcription factor ERF018-like | ||||
TrEMBL | I1Q0S7 | 1e-146 | I1Q0S7_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0074000.1 | 1e-146 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-25 | ERF family protein |