PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0040900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 410aa MW: 45441.1 Da PI: 7.7106 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.8 | 9.9e-07 | 157 | 180 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C Cg++F+++ +L+rH r H ORGLA06G0040900.1 157 YSCAVCGRRFPTRPDLTRHFRQlH 180 99*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.85E-5 | 155 | 183 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-4 | 156 | 183 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 13.256 | 157 | 185 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.9E-4 | 157 | 180 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 159 | 180 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 4.08E-10 | 175 | 307 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 1.3E-4 | 208 | 296 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MPPPLSFLHL AANPTPLHAS PLRRARLRHR LSLRTDHPSR RAVASASASA GENPSTPGGP 60 IADVEMVRGK DGVWTARPPT VVVLWDLDNK PPRGPPFPAA TALRDAASLL GRVVSVSAFA 120 NRHAFSHVPA WVADKRRERR AMDRAERAGA ASPPVPYSCA VCGRRFPTRP DLTRHFRQLH 180 QRERNKKLSR LRSLKGKKRQ KFRERFISGN TKYDDAAREL LTPKVGYGLA AELRRAGVHV 240 RTVSDKPQAA DHALKRQVKH SVACGVDWLV LVSDDSDFTD TVRKARAADL RTVVVGDGCR 300 ALGSVADIWL PWDRVENGEV DEDMLRNGTH MGFRDEEEDE QDDDEFIVDW DTSDLDGVVD 360 DIVATRTKLF GATTMSAFAD EEIMDGILGV GINGGYMLWS SDDEDEDGYF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0040900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB023482 | 0.0 | AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03. | |||
GenBank | AP002536 | 0.0 | AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT833717 | 0.0 | CT833717.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN087K01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641376.2 | 0.0 | uncharacterized protein LOC4340243 | ||||
TrEMBL | I1PZU6 | 0.0 | I1PZU6_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0040900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9806 | 32 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-92 | C2H2-like zinc finger protein |