PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA05G0224000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 282aa MW: 30273.6 Da PI: 8.2477 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2.1e-18 | 125 | 175 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrd + r +r++lg+f ta+eAa a++ a+++++g+ ORGLA05G0224000.1 125 YRGVRRRP-WGKFAAEIRDTRR---RgARVWLGTFATADEAALAYDMAALRMRGH 175 9*******.**********433...24**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-30 | 124 | 183 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-34 | 124 | 188 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-14 | 124 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.248 | 124 | 182 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 125 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-21 | 125 | 183 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.37E-21 | 132 | 182 | No hit | No description |
PRINTS | PR00367 | 2.8E-10 | 148 | 164 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MAIGAAPASN QPHDTSNILE NVWASIMTSS SSPAVSSSVA VSSSAVTGQE ENSAILQRLP 60 SLGRWISMGA EEWDELLLSG AALASESSGE LQLVAASPGD HNQVVGGGGG ANYRTTATAA 120 ARRSYRGVRR RPWGKFAAEI RDTRRRGARV WLGTFATADE AALAYDMAAL RMRGHRAHLN 180 FPLATVQKHL ERDLAGGRSS SDQTSTRARR RRRPRANTTT DAAARSVVFS GVQTATNCDH 240 MVSFASEKDQ VSMQECSKSD AGVIDFEEIG GEYWDYLFPP LV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-26 | 123 | 183 | 4 | 64 | ATERF1 |
3gcc_A | 9e-26 | 123 | 183 | 4 | 64 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA05G0224000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124143 | 0.0 | AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655590.1 | 1e-119 | PREDICTED: ethylene-responsive transcription factor ERF094-like | ||||
TrEMBL | A0A0E0HIH5 | 0.0 | A0A0E0HIH5_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PRA3 | 0.0 | A0A0E0PRA3_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2Y7H7 | 0.0 | A2Y7H7_ORYSI; Uncharacterized protein | ||||
TrEMBL | B9FI52 | 0.0 | B9FI52_ORYSJ; Uncharacterized protein | ||||
TrEMBL | I1PXZ2 | 0.0 | I1PXZ2_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI05G27790.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA05G27810.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA05G0224000.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11616 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 7e-12 | ERF family protein |