 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ORGLA05G0216200.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
MYB |
Protein Properties |
Length: 289aa MW: 30609.4 Da PI: 6.493 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ORGLA05G0216200.1 | genome | AGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53.1 | 7.4e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
rg+W++eEde+l +v+ +G g +W + +++ g++R++k+c++rw++yl
ORGLA05G0216200.1 14 RGPWSPEEDEQLRSYVQSHGIGgNWIALPQKAGLNRCGKSCRLRWLNYL 62
89******************999************************97 PP
|
2 | Myb_DNA-binding | 37.7 | 4.9e-12 | 71 | 111 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
T++Ed ++ + + G++ W+ Ia++++ gRt++++k++w++
ORGLA05G0216200.1 71 YTEQEDHIICSLYNSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111
69*****************.*********.***********97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MGRAPCCDKA SVKRGPWSPE EDEQLRSYVQ SHGIGGNWIA LPQKAGLNRC GKSCRLRWLN 60 YLRPDIKHGG YTEQEDHIIC SLYNSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAMGA 120 VQPRAAASAP SQCTSSAMAP VLSPASSSVT SSSGDACFAA AATTTTTMYP PPTTPPQQQF 180 IRFDAPPAAA AAASPTDLAP VPPPATVTAD GDGGWASDAL SLDDVFLGEL TAGEPLFPYA 240 ELFSGFTGAA PDSKATLELS ACYFPNMAEM WAASDHAYAK PQGLCNTLT
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK108452 | 0.0 | AK108452.1 Oryza sativa Japonica Group cDNA clone:002-143-C10, full insert sequence. |