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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ORGLA05G0124200.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
GRAS |
Protein Properties |
Length: 560aa MW: 58164.6 Da PI: 8.0504 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ORGLA05G0124200.1 | genome | AGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 229.9 | 1.2e-70 | 157 | 558 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPil 91
L +cAea++++ + a+a Lar+ +as dgd++qR+aa f+eA+a+ + r + ++++al ps++ e+ +a++ f +++P+l
ORGLA05G0124200.1 157 HLRRCAEALAASRPADADAELARIARMASADGDAVQRVAAAFAEAMARVVIRPWRGVSAALFPSDAGAAGdaltAWEAEFARQSFLNLCPLL 248
6889*********************************************************66666544346767778888999******** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
++ ++ N+ Ile + +++ +Hi+D++ + ++W+ Llq La+R+ + p lR+T v++ +k+ l + ++ La ++ gvp++ ++ v
ORGLA05G0124200.1 249 HLAAVAVNEIILETTRNDKFIHIVDLGGIHHAHWVELLQGLATRRaAVRPCLRLTIVHE----HKHFLGQAAQVLAAESDRHGVPLDLHI-V 335
******************************************98867799*********....99************************9.7 PP
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll.........................desvsleserdevLklvkslsPkvvvvveqeadhn 249
++++e+l+l++L v+++ a+++ + lqlhrl+ +++++s+ d++L+ + lsP+ ++++e+ea+h
ORGLA05G0124200.1 336 ESSVEALKLDALGVRSDHAVVIVSTLQLHRLVgagilsttappspaaaaaasmitspLPPANMSSKVDRLLRGFHLLSPRAIILTENEANHF 427
99****************************************************9987788888899************************* PP
GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplse..kaakqak 338
+sF +rf++al yy lf ++e+ ++++ er+ Er ll++ei++v+ac ++ r ++hetl++W r+++aGF +p + +aa ++
ORGLA05G0124200.1 428 VPSFTDRFASALPYYEQLFAAMEEA-GAAAVERKAAERYLLREEIKDVIACDHDGpRWAQHETLGRWVVRMGAAGFALAPAITvvTAAGRVR 518
**********************887.7899**********************9988********************9887655114455556 PP
GRAS 339 lllrkvksdg....yrveeesgslvlgWkdrpLvsvSaWr 374
++ ++ ++ g y v e g+l+l +++p++ vSaWr
ORGLA05G0124200.1 519 AVAARLPGGGderrYGVTEGGGWLILNREEKPMFCVSAWR 558
66666654334566*************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 560 aa
Download sequence Send
to blast |
MVAQAATAAG TTTAAATTAA VPMTNFQLFG SMVPVPVASM ATATAPAAVA AADNGGHGSS 60 SASQNASGSG EGQGGSMSLS LQLRPLGSTP TAAVAVSVPP MAAAPMMAGP AAAAPAPAPP 120 LATMAVAQNA SLAAVASALA AHRRNQATHR SAALHGHLRR CAEALAASRP ADADAELARI 180 ARMASADGDA VQRVAAAFAE AMARVVIRPW RGVSAALFPS DAGAAGDALT AWEAEFARQS 240 FLNLCPLLHL AAVAVNEIIL ETTRNDKFIH IVDLGGIHHA HWVELLQGLA TRRAAVRPCL 300 RLTIVHEHKH FLGQAAQVLA AESDRHGVPL DLHIVESSVE ALKLDALGVR SDHAVVIVST 360 LQLHRLVGAG ILSTTAPPSP AAAAAASMIT SPLPPANMSS KVDRLLRGFH LLSPRAIILT 420 ENEANHFVPS FTDRFASALP YYEQLFAAME EAGAAAVERK AAERYLLREE IKDVIACDHD 480 GPRWAQHETL GRWVVRMGAA GFALAPAITV VTAAGRVRAV AARLPGGGDE RRYGVTEGGG 540 WLILNREEKP MFCVSAWRRQ
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC105767 | 0.0 | AC105767.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B11, complete sequence. |
GenBank | AC136218 | 0.0 | AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence. |
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |