PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA03G0322500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 348aa MW: 37300 Da PI: 7.506 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.7 | 4.6e-32 | 224 | 279 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W+peLH++Fv a++qLGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+ ORGLA03G0322500.1 224 KSRRCWSPELHRQFVAALQQLGGPQVATPKQIREVMKVDGLTNDEVKSHLQKYRLH 279 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.681 | 221 | 281 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 222 | 282 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.82E-17 | 222 | 282 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-26 | 224 | 279 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.9E-7 | 226 | 277 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MGLDVGEIGM GLDLSLDLKM FAARSAVRMA AAAAKEATGV EACIRSLEEE RRKIEMFRRE 60 LPLCARLLAD VIELMKEEAG KRRKDGDDAE AKAEDGDKTK WMSTAQLWVD SRGSDADSEN 120 DRRSGSTSPA SRLLGGAEES SSRAVAPPPY FRREERVVLR PAMPLLPPAS HRSPPPAAAA 180 AATAAGDDHR HVVASSFATA VPSPVPAALS LQAQAQQQQQ QARKSRRCWS PELHRQFVAA 240 LQQLGGPQVA TPKQIREVMK VDGLTNDEVK SHLQKYRLHN RKSPGTASAS HSIVLVGDLW 300 ASQEVSCSQS GSPQGPLQLS GSGVAVSAAT AGDSCCEDDD KSEGYVRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-13 | 224 | 277 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-13 | 224 | 277 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-13 | 224 | 277 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-13 | 224 | 277 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA03G0322500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105625 | 0.0 | AK105625.1 Oryza sativa Japonica Group cDNA clone:001-200-C11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631206.1 | 0.0 | transcription factor HHO5 | ||||
TrEMBL | A0A0E0P1Q1 | 0.0 | A0A0E0P1Q1_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8AKI1 | 0.0 | B8AKI1_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1PFS9 | 0.0 | I1PFS9_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q7Y0B7 | 0.0 | Q7Y0B7_ORYSJ; Myb-like DNA-binding domain, SHAQKYF class family protein, expressed | ||||
STRING | ORUFI03G36670.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0764600-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA03G0322500.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | ORGLA10G0167800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1817 | 37 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 2e-40 | G2-like family protein |