PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0087700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 300aa    MW: 32063.7 Da    PI: 6.5176
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0087700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.52.1e-33151062102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        F+ k+y++++d++++ +i w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++l
  ORGLA02G0087700.1  15 FVAKTYRMVDDPATDGVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQTHL 97 
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i r++s
  ORGLA02G0087700.1  98 LRRIVRRSS 106
                        ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.52E-3311104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.9E-3711104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-5211104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-171538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-2915104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-175365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-176678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MTTTTAEGGG GVAPFVAKTY RMVDDPATDG VIAWGRDSNS FVVADPFAFS QTLLPAHFKH  60
SNFSSFVRQL NTYGFRKVDP DRWEFAHVSF LRGQTHLLRR IVRRSSGGGG AKRKEEAGGC  120
GGGGEAAAGD VDEESAVVAM EVARLRREQR EIEGRVAAMW RRVQETERRP KQMLAFLVKV  180
VGDPQVLRRL VDRDNTNAAA AASNADDAAV HHQVKRPRLL LDSSSTTTTH GDRHLVTAAA  240
DGFYAGGCGP EAAAAAAFVP DDAVDFTGLY TGGDGFGNAV VDAGVDYPPA YAFPVVDSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-23610420129Heat shock factor protein 1
5d5v_B1e-23610420129Heat shock factor protein 1
5d5v_D1e-23610420129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0087700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064880.0AK106488.1 Oryza sativa Japonica Group cDNA clone:002-105-A02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623571.10.0heat stress transcription factor C-2a
SwissprotQ6EUG40.0HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLI1NYS10.0I1NYS1_ORYGL; Uncharacterized protein
STRINGORGLA02G0087700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-56heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]