PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA02G0014200.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 421aa MW: 44263.7 Da PI: 4.477

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA02G0014200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.6e-12	157	200	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 e+Er+RR+++N + +Lr+l+P+ +K++ a+iL A++YI Lq ORGLA02G0014200.1 157 EAERKRRKKLNGHLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 200 89*******************7.....7*************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.80E-14	149	211	No hit	No description
PROSITE profile	PS50888	15.37	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-18	151	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-15	156	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.4E-15	157	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.7E-10	157	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0048657	Biological Process	anther wall tapetum cell differentiation
GO:0005634	Cellular Component	nucleus
GO:0000978	Molecular Function	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MAEEQQMAEL VMAQCGGGGG GGAGDDGGGQ AWPPPETPSF QWDGGADAQR LMYGGSSLNL 60 FDAAAADDDP FLGGGGGGGG DAVGDAAAAA GAWPYAGMAM SEPSVAVAQE QMQHAAGGGV 120 AESGSEGREL HGGDPEDDGD GEGRSGGAKR QQCKNLEAER KRRKKLNGHL YKLRSLVPNI 180 TKMDRASILG DAIDYIVGLQ KQVKELQDEL EDNHVHHKPP DVLVDHPPPA SLVGLDNDDA 240 SPPNSHQQQP PLAVAGSSSR RSNKDPAMTD DKVGGGGGGG HRMEPQLEVR QVQGNELFVQ 300 VLWEHKPGGF VRLMDAMNAL GLEVINVNVT TYKTLVLNVF RVMVRDNEVA MQADRVRDSL 360 LEVTRETYPG VWPSPQEEDD AKFDGGDGGQ AAAAAAAAGG EHYHDEVGGG YHQHLHYLAF 420 D

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MAEEQQMAEL VMAQCGGGGG GGAGDDGGGQ AWPPPETPSF QWDGGADAQR LMYGGSSLNL  60
FDAAAADDDP FLGGGGGGGG DAVGDAAAAA GAWPYAGMAM SEPSVAVAQE QMQHAAGGGV  120
AESGSEGREL HGGDPEDDGD GEGRSGGAKR QQCKNLEAER KRRKKLNGHL YKLRSLVPNI  180
TKMDRASILG DAIDYIVGLQ KQVKELQDEL EDNHVHHKPP DVLVDHPPPA SLVGLDNDDA  240
SPPNSHQQQP PLAVAGSSSR RSNKDPAMTD DKVGGGGGGG HRMEPQLEVR QVQGNELFVQ  300
VLWEHKPGGF VRLMDAMNAL GLEVINVNVT TYKTLVLNVF RVMVRDNEVA MQADRVRDSL  360
LEVTRETYPG VWPSPQEEDD AKFDGGDGGQ AAAAAAAAGG EHYHDEVGGG YHQHLHYLAF  420
D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	165	ERKRRKKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269\|PubMed:17138695, ECO:0000269\|PubMed:19825565, ECO:0000269\|PubMed:23385589}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA02G0014200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106761	0.0	AK106761.1 Oryza sativa Japonica Group cDNA clone:002-115-D12, full insert sequence.
GenBank	AK119580	0.0	AK119580.1 Oryza sativa Japonica Group cDNA clone:002-117-B12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625730.1	0.0	transcription factor TDR
Refseq	XP_025878930.1	0.0	transcription factor TDR
Refseq	XP_025878931.1	0.0	transcription factor TDR
Swissprot	Q6YUS3	0.0	TDR_ORYSJ; Transcription factor TDR
TrEMBL	I1NWN6	0.0	I1NWN6_ORYGL; Uncharacterized protein
STRING	ORGLA02G0014200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5530	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-51	bHLH family protein

Publications ? help Back to Top
Endo M, et al. High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development. Plant Cell Physiol., 2009. 50(11): p. 1911-22 [PMID:19808807] Xu J,Wu M,He C [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae]. Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61 [PMID:20387456] Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996] Zhang D, et al. OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice. Plant Physiol., 2010. 154(1): p. 149-62 [PMID:20610705] Senapati PK,Behera S Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock. Bioresour. Technol., 2012. 117: p. 99-106 [PMID:22613886] Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content]. Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7 [PMID:23285852] Li L, et al. An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development. Planta, 2015. 241(1): p. 157-66 [PMID:25236969] Yi J, et al. Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration. Plant Physiol., 2016. 170(3): p. 1611-23 [PMID:26697896]