PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA01G0318100.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 540aa MW: 59568.7 Da PI: 6.8637

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA01G0318100.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.9e-11	229	259	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k err+++NReAAr+sR+RKka++++Le+ ORGLA01G0318100.1 229 AKTERRLAQNREAARKSRLRKKAYVQNLETS 259 799*************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.3E-7	226	302	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	228	272	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.0E-8	229	260	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.49E-20	230	282	No hit	No description
SuperFamily	SSF57959	7.03E-7	230	273	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.5E-7	230	274	No hit	No description
PROSITE pattern	PS00036	0	233	248	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.6E-29	311	385	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MVQGEESSWR MAASTHHERA IPLNQALAYG VQAHASPSVA AAPPASFLDF QPAAAAAAYF 60 GELEEALIHG ANAGGVVVDP GMIRADVHSK SAAAAATAGY LAARPPTLEI FPSWPMRQQQ 120 QLHSGNSQSV GSTTDSSSAQ NTMPQMELVS PASIRASSEH QHQQQQPGQE VMMVTTDDYS 180 YKPGLAAASP SFQQQHQLQH HQQQQLHGGG DHDKRKHGST RKDGKSVDAK TERRLAQNRE 240 AARKSRLRKK AYVQNLETSR VRLQQIEQEL QRARSQGLFL GGCSAAGDMS SGAAMFDMEY 300 ARWLDDDSKR LTDLRGGLQA HLLDTNLGLI VEECMQHYDE LFQLKAALAR SDVFHLLTGT 360 WATPAERCFL WMGGFRPSDL LKILIQQLDP LTEQQMLGIY SLQQSSEQAE EALAQGLQQL 420 HQSLADTVAA GTLNDGPGVP NYMSLMAIAL DKLASLESFY QQADNLRQQT LHQLRRILTT 480 RQAARCFLSI GEYYRRLRAL SNLWSSRPRE NFIGTESVSP TGTELQPMHN QPQQNQYSGF

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MVQGEESSWR MAASTHHERA IPLNQALAYG VQAHASPSVA AAPPASFLDF QPAAAAAAYF  60
GELEEALIHG ANAGGVVVDP GMIRADVHSK SAAAAATAGY LAARPPTLEI FPSWPMRQQQ  120
QLHSGNSQSV GSTTDSSSAQ NTMPQMELVS PASIRASSEH QHQQQQPGQE VMMVTTDDYS  180
YKPGLAAASP SFQQQHQLQH HQQQQLHGGG DHDKRKHGST RKDGKSVDAK TERRLAQNRE  240
AARKSRLRKK AYVQNLETSR VRLQQIEQEL QRARSQGLFL GGCSAAGDMS SGAAMFDMEY  300
ARWLDDDSKR LTDLRGGLQA HLLDTNLGLI VEECMQHYDE LFQLKAALAR SDVFHLLTGT  360
WATPAERCFL WMGGFRPSDL LKILIQQLDP LTEQQMLGIY SLQQSSEQAE EALAQGLQQL  420
HQSLADTVAA GTLNDGPGVP NYMSLMAIAL DKLASLESFY QQADNLRQQT LHQLRRILTT  480
RQAARCFLSI GEYYRRLRAL SNLWSSRPRE NFIGTESVSP TGTELQPMHN QPQQNQYSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA01G0318100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101338	0.0	AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616943.1	0.0	transcription factor LG2 isoform X2
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A0D3EWJ0	0.0	A0A0D3EWJ0_9ORYZ; Uncharacterized protein
STRING	ORGLA01G0318100.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-121	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]