PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0238400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 241aa    MW: 25544.4 Da    PI: 8.2902
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0238400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.5e-30155213159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh 
  ORGLA01G0238400.1 155 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKNDPRYVVTMYEGIHNHV 213
                        59********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-31142213IPR003657WRKY domain
SuperFamilySSF1182901.44E-26148214IPR003657WRKY domain
PROSITE profilePS5081131.158150215IPR003657WRKY domain
SMARTSM007748.2E-33155214IPR003657WRKY domain
PfamPF031061.3E-23156212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MYMAAAAAGA STPFNFCRHG SHAEYDAVFS GSWMARRPSA APHGGGASGS GYGAASYVAP  60
TFGAAFRQQH LDLLDYLSDD QGVPAPPPAA VPSASYVTPA PAMAPAEPVV PDAVAAAGGY  120
PRSVAAAAAA VAGEGRDRTT TDKIAFRTRS DDEILDDGYK WRKYGKKSVK NSPNPRNYYR  180
CSTEGCNVKK RVERDKNDPR YVVTMYEGIH NHVCPGTVYY AAQDAASGRF FVAGISHPDL  240
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-24145215777Probable WRKY transcription factor 4
2lex_A6e-24145215777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0238400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085550.0AK108555.1 Oryza sativa Japonica Group cDNA clone:002-144-E10, full insert sequence.
GenBankAY8706090.0AY870609.1 Oryza sativa (japonica cultivar-group) WRKY26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635650.11e-121WRKY transcription factor WRKY24
TrEMBLI1NR941e-175I1NR94_ORYGL; Uncharacterized protein
STRINGORGLA01G0238400.11e-176(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-35WRKY DNA-binding protein 51