PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G02320.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 821aa    MW: 90170.8 Da    PI: 8.2907
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G02320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.26.1e-93344784374
             GRAS   4 lLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfsh 95 
                      +Ll+cA +v++g +e+a+++Lar   la+ +g  p +Rla  ++  La+rl+r v+++ + l  ps     +  ++ aa++ f+e+sP++k+++
  OPUNC12G02320.1  34 ALLQCAAHVEAGPMEKATRCLARATGLAAAAGdGPRKRLAVAMVDCLARRLLRPVHSITDVLiDPSGYL--DRRSVRAARRWFFELSPFPKVAF 125
                      79*************************99999679******************9999999874444444..45556679999************ PP

             GRAS  96 ltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ N+aI+eave+e+ vH+  ++   +q+ QW+ Ll++L  Rpegpp  +R+T+v++    + e l +++e  ++ A+elg++++f++ v+ +l
  OPUNC12G02320.1 126 VVGNRAIVEAVENESLVHVFGMSgpFTQPCQWIQLLHELRRRPEGPPrAVRLTVVHD----DGEFLAKMAELVSDEADELGMELKFHA-VVGQL 214
                      *******************99985679****************998879********....9**************************.7999* PP

             GRAS 187 edleleeL....rvkpgEalaVnlvlqlhrll.............................................................. 214
                      edl++++L    ++k+gEalaV++ lqlhrll                                                              
  OPUNC12G02320.1 215 EDLNFSNLhgvlEIKSGEALAVSCTLQLHRLLaaaddlyssrsahlnqmasiaqlqhmaasscppsscgasvqckddddsyrspgtplafvspp 308
                      ******9977778999****************************************************************************** PP

             GRAS 215 ..desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres........eerikvErellgreivnvv 298
                          + +++ +  ++L++v+ lsPk+vvv+eq+adhn+ sF +rf+eal++y+a+fdsl+a + ++s        +er+ vEr+++g+ei+ v+
  OPUNC12G02320.1 309 asTPHFQMPAPLASFLSAVRALSPKIVVVAEQDADHNGVSFRKRFCEALHHYVAVFDSLDAAAVTASaashlwppDERAQVERVVVGEEIKGVL 402
                      87445555667778*********************************************77644444466899999****************** PP

             GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         ga+rrerh +l++W +r+e+aGF+ vpls+ a  + + ++++++ +  + +e  g+l+l+W++rpL+svSaWr
  OPUNC12G02320.1 403 LRDGAHRRERHDRLRQWTARMEMAGFTGVPLSYVAIRKGNDMVKRCGLRRCENKECGGCLLLCWSSRPLYSVSAWR 478
                      ***********************************************887999999*******************8 PP
2GRAS74.12.5e-2355980176273
             GRAS  76 eelaalklfsevsPilkfshltaNqaIleavege....ervHiiDfd..isqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.skeeleet 161
                      +  aa++ f+++ P+l  +++t N+aI+ a+e e    + vHi+D++  +s++ QW+ Ll+ +  Rp+g   +l  T + s+ ++ s  + ++ 
  OPUNC12G02320.1 559 TLRAARCNFFKLNPYLSTGFVTINRAIMGAMEDEkvklQVVHIVDLScsASHPWQWLKLLDDFHGRPGGVGgHLNYTLLFSMMTTsSCPTCSHC 652
                      34456666**************************8888899*****7335799**************88666*****99997766655555555 PP

             GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll......................................... 214
                        r  ++ +   v f +  l + +++++  +++++k g a+a++++lq+hrll                                         
  OPUNC12G02320.1 653 YLRKLNLLRCPSVLFVIGRLDTLDFSNF-RSTFQIKFGVAVAISCALQMHRLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylq 745
                      5555556677777777777644455555.46678899*******************************************************98 PP

             GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                        s  +++   ++L++++ l+P+++v++eq+adhn+  F + f++   y ++++ sl a
  OPUNC12G02320.1 746 TPSPRTPKLLARLLSAIRALKPNIMVIMEQDADHNTLLFRDWFMR---YSTTMLSSLTA 801
                      666777778899*****************************9974...66666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.45458IPR005202Transcription factor GRAS
PfamPF035142.1E-9034478IPR005202Transcription factor GRAS
PROSITE profilePS509859.446454821IPR005202Transcription factor GRAS
PfamPF035148.8E-21559801IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MFSGTDASSP ELSLCLPYGP WTQGHGPTEQ LGLALLQCAA HVEAGPMEKA TRCLARATGL  60
AAAAGDGPRK RLAVAMVDCL ARRLLRPVHS ITDVLIDPSG YLDRRSVRAA RRWFFELSPF  120
PKVAFVVGNR AIVEAVENES LVHVFGMSGP FTQPCQWIQL LHELRRRPEG PPRAVRLTVV  180
HDDGEFLAKM AELVSDEADE LGMELKFHAV VGQLEDLNFS NLHGVLEIKS GEALAVSCTL  240
QLHRLLAAAD DLYSSRSAHL NQMASIAQLQ HMAASSCPPS SCGASVQCKD DDDSYRSPGT  300
PLAFVSPPAS TPHFQMPAPL ASFLSAVRAL SPKIVVVAEQ DADHNGVSFR KRFCEALHHY  360
VAVFDSLDAA AVTASAASHL WPPDERAQVE RVVVGEEIKG VLLRDGAHRR ERHDRLRQWT  420
ARMEMAGFTG VPLSYVAIRK GNDMVKRCGL RRCENKECGG CLLLCWSSRP LYSVSAWRPA  480
ASRGPGSGSG RSEPRREAAE SLVDLSRDPG SPVASITRAG VALWVPALFP SRSPDQPIRD  540
VLGLRGALID PSDYFEQSTL RAARCNFFKL NPYLSTGFVT INRAIMGAME DEKVKLQVVH  600
IVDLSCSASH PWQWLKLLDD FHGRPGGVGG HLNYTLLFSM MTTSSCPTCS HCYLRKLNLL  660
RCPSVLFVIG RLDTLDFSNF RSTFQIKFGV AVAISCALQM HRLLLVDDNL SSTSIAQLQK  720
MANFTQPKQM ASSVCSPAST LNYLQTPSPR TPKLLARLLS AIRALKPNIM VIMEQDADHN  780
TLLFRDWFMR YSTTMLSSLT ASMQWLQLTQ GGLMNAYVWK G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-143747925380Protein SCARECROW
5b3h_A6e-143747924379Protein SCARECROW
5b3h_D6e-143747924379Protein SCARECROW
5hyz_A5e-14344787375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619131.10.0scarecrow-like protein 3
TrEMBLA0A0E0MJG60.0A0A0E0MJG6_ORYPU; Uncharacterized protein
STRINGOPUNC12G02320.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-77scarecrow-like 3