PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G11750.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 243aa    MW: 25954.3 Da    PI: 9.3351
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G11750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.7e-33138196159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg+H+h+
  OPUNC11G11750.1 138 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSRDEAVVVTTYEGTHTHP 196
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-35123196IPR003657WRKY domain
SuperFamilySSF1182909.02E-30130197IPR003657WRKY domain
PROSITE profilePS5081130.308133198IPR003657WRKY domain
SMARTSM007744.5E-40138197IPR003657WRKY domain
PfamPF031061.8E-27139196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MENFPILFAT QPSSSTSSSY HFMSSSSGSH DHRHHHGLQA GGNGGGGGGG SLSHGLFMGS  60
SSSSRMQELS NSKDDDIDGA TRSPSHGGGG GHGDSSAGDG AGDVSDVQAA AVGGRKKGEK  120
KERRPRFAFQ TRSQVDILDD GYRWRKYGQK AVKNNKFPRS YYRCTHQGCN VKKQVQRLSR  180
DEAVVVTTYE GTHTHPIEKS NDNFEHILTQ MHIYSGLTPS SAAHASSSSP LFPSAAAAAH  240
MFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27129197876Probable WRKY transcription factor 4
2lex_A2e-27129197876Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1088600.0AK108860.1 Oryza sativa Japonica Group cDNA clone:002-152-B08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615223.11e-110probable WRKY transcription factor 56
TrEMBLA0A0E0MFK01e-178A0A0E0MFK0_ORYPU; Uncharacterized protein
STRINGOPUNC11G11750.11e-179(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.18e-56WRKY DNA-binding protein 75